Index (ImageJ API)

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A

ABGR - Static variable in class ij.io.FileInfo: 32-bit interleaved ABGR.
ABOUT_MENU - Static variable in class ij.Menus
ABS - Static variable in interface ij.macro.MacroConstants
ACOS - Static variable in interface ij.macro.MacroConstants
ADD - Static variable in interface ij.process.Blitter: dst=dst+src
ADD_TO_MANAGER - Static variable in class ij.plugin.filter.ParticleAnalyzer: Add particles to ROI Manager.
ALL_KEYS - Static variable in class ij.IJ
AND - Static variable in interface ij.process.Blitter: dst=dst AND src
ANGLE - Static variable in class ij.gui.Roi
ANGLE - Static variable in class ij.gui.Toolbar
ANGLE - Static variable in class ij.measure.ResultsTable
AREA - Static variable in interface ij.measure.Measurements
AREA - Static variable in class ij.measure.ResultsTable
AREA_FRACTION - Static variable in interface ij.measure.Measurements
AREA_FRACTION - Static variable in class ij.measure.ResultsTable
ARGB - Static variable in class ij.io.FileInfo: 32-bit interleaved ARGB.
ARG_ARRAY - Static variable in interface ij.macro.MacroExtension
ARG_NUMBER - Static variable in interface ij.macro.MacroExtension
ARG_OPTIONAL - Static variable in interface ij.macro.MacroExtension
ARG_OUTPUT - Static variable in interface ij.macro.MacroExtension
ARG_STRING - Static variable in interface ij.macro.MacroExtension
ARRAY - Static variable in interface ij.macro.MacroConstants
ARRAY_FUNC - Static variable in interface ij.macro.MacroConstants
ARRAY_FUNCTION - Static variable in interface ij.macro.MacroConstants
ARTEST - Static variable in class ij.io.TiffDecoder
ASIN - Static variable in interface ij.macro.MacroConstants
ASPECT_RATIO - Static variable in class ij.measure.ResultsTable
ATAN - Static variable in interface ij.macro.MacroConstants
ATAN2 - Static variable in interface ij.macro.MacroConstants
AUTO_UPDATE - Static variable in interface ij.macro.MacroConstants
AVERAGE - Static variable in interface ij.process.Blitter: dst=(dst+src)/2
AVG_METHOD - Static variable in class ij.plugin.ZProjector
AVI - Static variable in class ij.io.Opener
AVI_Reader - class ij.plugin.AVI_Reader.: ImageJ Plugin for reading an AVI file into an image stack (one slice per video frame) Version 2008-07-03 by Michael Schmid, based on a plugin by Daniel Marsh and Wayne Rasband Restrictions and Notes: - Only few formats supported: - uncompressed 8 bit with palette (=LUT) - uncompressed 8 & 16 bit grayscale - uncompressed 24 & 32 bit RGB (alpha channel ignored) - uncompressed 32 bit AYUV (alpha channel ignored) - various YUV 4:2:2 compressed formats - png or jpeg-encoded individual frames.
AVI_Reader() - Constructor for class ij.plugin.AVI_Reader
AVI_Writer - class ij.plugin.filter.AVI_Writer.: This plugin saves stacks in AVI format.
AVI_Writer() - Constructor for class ij.plugin.filter.AVI_Writer
AboutBox - class ij.plugin.AboutBox.: This plugin implements the Help/About ImageJ command by opening the about.jpg in ij.jar, scaling it 400% and adding some text.
AboutBox() - Constructor for class ij.plugin.AboutBox
Analyzer - class ij.plugin.filter.Analyzer.: This plugin implements ImageJ's Analyze/Measure and Analyze/Set Measurements commands.
Analyzer() - Constructor for class ij.plugin.filter.Analyzer
Analyzer(ImagePlus) - Constructor for class ij.plugin.filter.Analyzer: Constructs a new Analyzer using the specified ImagePlus object and the current measurement options and default results table.
Analyzer(ImagePlus, int, ResultsTable) - Constructor for class ij.plugin.filter.Analyzer: Construct a new Analyzer using an ImagePlus object and private measurement options and results table.
Animator - class ij.plugin.Animator.: This plugin animates stacks.
Animator() - Constructor for class ij.plugin.Animator
AutoThresholder - class ij.process.AutoThresholder.: Autothresholding methods from the Auto_Threshold plugin (http://pacific.mpi-cbg.de/wiki/index.php/Auto_Threshold) by G.Landini at bham dot ac dot uk.
AutoThresholder() - Constructor for class ij.process.AutoThresholder
abort() - Static method in class ij.Macro: Aborts the currently running macro or any plugin using IJ.run().
abort() - Static method in class ij.macro.Interpreter: Aborts currently running macro.
abort(Interpreter) - Static method in class ij.macro.Interpreter: Absolete, replaced by abortMacro().
abortMacro() - Method in class ij.macro.Interpreter: Aborts this macro.
abortPaste() - Method in class ij.gui.Roi
abs() - Method in class ij.process.FloatProcessor
abs() - Method in class ij.process.ImageProcessor: If this is a 32-bit or signed 16-bit image, performs an absolute value transform, otherwise does nothing.
abs() - Method in class ij.process.ShortProcessor
accept(File, String) - Method in class ij.plugin.Compiler
actionPerformed(ActionEvent) - Method in class ij.ImageJ: Handle menu events.
actionPerformed(ActionEvent) - Method in class ij.gui.GenericDialog
actionPerformed(ActionEvent) - Method in class ij.gui.HTMLDialog
actionPerformed(ActionEvent) - Method in class ij.gui.HistogramWindow
actionPerformed(ActionEvent) - Method in class ij.gui.MessageDialog
actionPerformed(ActionEvent) - Method in class ij.gui.NonBlockingGenericDialog
actionPerformed(ActionEvent) - Method in class ij.gui.PlotWindow
actionPerformed(ActionEvent) - Method in class ij.gui.SaveChangesDialog
actionPerformed(ActionEvent) - Method in class ij.gui.StackWindow
actionPerformed(ActionEvent) - Method in class ij.gui.Toolbar
actionPerformed(ActionEvent) - Method in class ij.gui.WaitForUserDialog
actionPerformed(ActionEvent) - Method in class ij.gui.YesNoCancelDialog
actionPerformed(ActionEvent) - Method in class ij.plugin.BatchConverter
actionPerformed(ActionEvent) - Method in class ij.plugin.BatchProcesser
actionPerformed(ActionEvent) - Method in class ij.plugin.CommandFinder
actionPerformed(ActionEvent) - Method in class ij.plugin.LUT_Editor
actionPerformed(ActionEvent) - Method in class ij.plugin.MacroInstaller
actionPerformed(ActionEvent) - Method in class ij.plugin.Orthogonal_Views
actionPerformed(ActionEvent) - Method in class ij.plugin.filter.Calibrator
actionPerformed(ActionEvent) - Method in class ij.plugin.filter.Convolver
actionPerformed(ActionEvent) - Method in class ij.plugin.frame.Channels
actionPerformed(ActionEvent) - Method in class ij.plugin.frame.ContrastAdjuster
actionPerformed(ActionEvent) - Method in class ij.plugin.frame.Editor
actionPerformed(ActionEvent) - Method in class ij.plugin.frame.Fitter
actionPerformed(ActionEvent) - Method in class ij.plugin.frame.Recorder
actionPerformed(ActionEvent) - Method in class ij.plugin.frame.RoiManager
actionPerformed(ActionEvent) - Method in class ij.plugin.frame.ThresholdAdjuster
actionPerformed(ActionEvent) - Method in class ij.text.TextPanel
actionPerformed(ActionEvent) - Method in class ij.text.TextWindow
add(Component) - Method in class ij.gui.ImageWindow
add(ImageProcessor, double) - Method in class ij.plugin.filter.SaltAndPepper
add(ImagePlus, Roi, int) - Method in class ij.plugin.frame.RoiManager: Adds the specified ROI to the list.
add(int) - Method in class ij.process.FloatProcessor
add(double) - Method in class ij.process.FloatProcessor
add(int) - Method in class ij.process.ImageProcessor: Adds 'value' to each pixel in the image or ROI.
add(double) - Method in class ij.process.ImageProcessor: Adds 'value' to each pixel in the image or ROI.
add(int) - Method in class ij.process.ShortProcessor
add(double) - Method in class ij.process.ShortProcessor
addBatchModeImage(ImagePlus) - Static method in class ij.macro.Interpreter
addChar(char) - Method in class ij.gui.TextRoi: Adds the specified character to the end of the text string.
addCheckbox(String, boolean) - Method in class ij.gui.GenericDialog: Adds a checkbox.
addCheckboxGroup(int, int, String[], boolean[]) - Method in class ij.gui.GenericDialog: Adds a group of checkboxs using a grid layout.
addChoice(String, String[], String) - Method in class ij.gui.GenericDialog: Adds a popup menu.
addCircle(String, String, String) - Static method in class ij.gui.ShapeRoi
addColumns() - Method in class ij.measure.ResultsTable
addCommandListener(CommandListener) - Static method in class ij.Executer: Adds the specified command listener.
addDialogListener(DialogListener) - Method in class ij.gui.GenericDialog: Add an Object implementing the DialogListener interface.
addErrorBars(float[]) - Method in class ij.gui.Plot: Adds error bars to the plot.
addErrorBars(double[]) - Method in class ij.gui.Plot: Adds error bars to the plot.
addErrorBars(float[]) - Method in class ij.gui.PlotWindow: Adds error bars to the plot.
addHelp(String) - Method in class ij.gui.GenericDialog
addImageListener(ImageListener) - Static method in class ij.ImagePlus
addKeyListener(KeyListener) - Method in class ij.text.TextPanel: Unused keyPressed and keyTyped events will be passed to 'listener'.
addLabel(double, double, String) - Method in class ij.gui.Plot: Draws text at the specified location, where (0,0) is the upper left corner of the the plot frame and (1,1) is the lower right corner.
addLabel(double, double, String) - Method in class ij.gui.PlotWindow: Draws a label.
addLabel(String) - Method in class ij.measure.ResultsTable: Adds a label to the beginning of the current row.
addLabel(String, String) - Method in class ij.measure.ResultsTable: Adds a label to the beginning of the current row.
addLayoutComponent(String, Component) - Method in class ij.gui.ImageLayout: Not used by this class.
addMacroTool(String, MacroInstaller, int) - Method in class ij.gui.Toolbar: Used by the MacroInstaller class to install macro tools.
addMessage(String) - Method in class ij.gui.GenericDialog: Adds a message consisting of one or more lines of text.
addNotify() - Method in class ij.gui.MultiLineLabel
addNumericField(String, double, int) - Method in class ij.gui.GenericDialog: Adds a numeric field.
addNumericField(String, double, int, int, String) - Method in class ij.gui.GenericDialog: Adds a numeric field.
addOffset() - Method in class ij.gui.PolygonRoi
addOpenRecentItem(String) - Static method in class ij.Menus: Adds a file path to the beginning of the File/Open Recent submenu.
addPanel(Panel) - Method in class ij.gui.GenericDialog: Adds a Panel to the dialog.
addPanel(Panel, int, Insets) - Method in class ij.gui.GenericDialog: Adds a Panel to the dialog with custom contraint and insets.
addPoint(int, int) - Method in class ij.gui.PointRoi: Adds a point to this selection and return the result.
addPoints(float[], float[], int) - Method in class ij.gui.Plot: Adds a set of points to the plot or adds a curve if shape is set to LINE.
addPoints(double[], double[], int) - Method in class ij.gui.Plot: Adds a set of points to the plot using double arrays.
addPoints(float[], float[], int) - Method in class ij.gui.PlotWindow: Adds a set of points to the plot or adds a curve if shape is set to LINE.
addPoints(double[], double[], int) - Method in class ij.gui.PlotWindow: Adds a set of points to the plot using double arrays.
addPreviewCheckbox(PlugInFilterRunner) - Method in class ij.gui.GenericDialog: Adds a checkbox labelled "Preview" for "automatic" preview.
addPreviewCheckbox(PlugInFilterRunner, String) - Method in class ij.gui.GenericDialog: Add the preview checkbox with user-defined label; for details see the addPreviewCheckbox method with standard "Preview" label.
addResults() - Method in class ij.measure.ResultsTable: Adds the last row in this table to the Results window without updating it.
addSlice(String, Object) - Method in class ij.ImageStack: Adds an image in the forma of a pixel array to the end of the stack.
addSlice(String, ImageProcessor) - Method in class ij.ImageStack: Adds the image in 'ip' to the end of the stack.
addSlice(String, ImageProcessor, int) - Method in class ij.ImageStack: Adds the image in 'ip' to the stack following slice 'n'.
addSlice(String) - Method in class ij.VirtualStack: Adds an image to the end of the stack.
addSlice(String, Object) - Method in class ij.VirtualStack: Does nothing.
addSlice(String, ImageProcessor) - Method in class ij.VirtualStack: Does nothing..
addSlice(String, ImageProcessor, int) - Method in class ij.VirtualStack: Does noting.
addSlider(String, double, double, double) - Method in class ij.gui.GenericDialog
addStringField(String, String) - Method in class ij.gui.GenericDialog: Adds an 8 column text field.
addStringField(String, String, int) - Method in class ij.gui.GenericDialog: Adds a text field.
addTextAreas(String, String, int, int) - Method in class ij.gui.GenericDialog: Adds one or two (side by side) text areas.
addToManager - Variable in class ij.plugin.filter.ParticleAnalyzer
addTool(String) - Method in class ij.gui.Toolbar: Adds a tool to the toolbar.
addUnsignedShortSlice(String, Object) - Method in class ij.ImageStack: Obsolete.
addValue(int, double) - Method in class ij.measure.ResultsTable: Adds a value to the end of the given column.
addValue(String, double) - Method in class ij.measure.ResultsTable: Adds a value to the end of the given column.
addWindow(Frame) - Static method in class ij.WindowManager: Adds the specified window to the Window menu.
adjustmentValueChanged(AdjustmentEvent) - Method in class ij.gui.ColorChooser
adjustmentValueChanged(AdjustmentEvent) - Method in class ij.gui.GenericDialog
adjustmentValueChanged(AdjustmentEvent) - Method in class ij.gui.StackWindow
adjustmentValueChanged(AdjustmentEvent) - Method in class ij.plugin.Orthogonal_Views
adjustmentValueChanged(AdjustmentEvent) - Method in class ij.plugin.frame.ContrastAdjuster
adjustmentValueChanged(AdjustmentEvent) - Method in class ij.plugin.frame.LineWidthAdjuster
adjustmentValueChanged(AdjustmentEvent) - Method in class ij.plugin.frame.ThresholdAdjuster
adjustmentValueChanged(AdjustmentEvent) - Method in class ij.text.TextPanel
allPoints() - Static method in class ij.gui.Wand
altKeyDown() - Static method in class ij.IJ: Returns true if the alt key is down.
analyze(ImagePlus) - Method in class ij.plugin.filter.LineGraphAnalyzer: Uses ImageJ's particle analyzer to extract a set of coordinate pairs from a digitized line graph.
analyze(ImagePlus) - Method in class ij.plugin.filter.ParticleAnalyzer: Performs particle analysis on the specified image.
analyze(ImagePlus, ImageProcessor) - Method in class ij.plugin.filter.ParticleAnalyzer: Performs particle analysis on the specified ImagePlus and ImageProcessor.
analyzer - Variable in class ij.plugin.filter.ParticleAnalyzer
and(ShapeRoi) - Method in class ij.gui.ShapeRoi: Unary intersection operator.
and(int) - Method in class ij.process.FloatProcessor
and(int) - Method in class ij.process.ImageProcessor: Binary AND of each pixel in the image or ROI with 'value'.
and(int) - Method in class ij.process.ShortProcessor
angle - Variable in class ij.process.EllipseFitter: Angle in degrees
angle - Variable in class ij.process.ImageStatistics: Angle in degrees of fitted ellipse
angstromSymbol - Static variable in class ij.IJ
antialiasedText - Static variable in class ij.Prefs: No longer used
antialiasedText - Variable in class ij.process.ImageProcessor
antialiasedTools - Static variable in class ij.Prefs: Draw tool icons using antialiasing.
append(String, String) - Static method in class ij.IJ: Appends a string to the end of a file.
append(String) - Method in class ij.plugin.frame.Editor
append(String) - Method in class ij.text.TextPanel: Adds one or more lines to the end of this TextPanel.
append(ArrayList) - Method in class ij.text.TextPanel: Adds strings contained in an ArrayList to the end of this TextPanel.
append(String) - Method in class ij.text.TextWindow: Adds one or lines of text to the window.
appendLine(String) - Method in class ij.text.TextPanel: Adds a single line to the end of this TextPanel.
appendWithoutUpdate(String) - Method in class ij.text.TextPanel: Adds a single line to the end of this TextPanel without updating the display.
applyLut() - Method in class ij.process.ByteProcessor
applyTable(int[]) - Method in class ij.process.ByteProcessor
applyTable(int[]) - Method in class ij.process.ColorProcessor
applyTable(int[], int) - Method in class ij.process.ColorProcessor
applyTable(int[]) - Method in class ij.process.FloatProcessor
applyTable(int[]) - Method in class ij.process.ImageProcessor: Transforms the image or ROI using a lookup table.
applyTable(int[]) - Method in class ij.process.ShortProcessor: Transforms the pixel data using a 65536 entry lookup table.
applyTable(int[]) - Method in class ij.process.StackProcessor
area - Variable in class ij.process.ImageStatistics
areaFraction - Variable in class ij.process.ImageStatistics
argTypes - Variable in class ij.macro.ExtensionDescriptor
arrayFunctionIDs - Static variable in interface ij.macro.MacroConstants
arrayFunctions - Static variable in interface ij.macro.MacroConstants
asp_bk - Variable in class ij.gui.Roi
aspect - Variable in class ij.gui.Roi
autoClose - Static variable in class ij.gui.PlotWindow: Automatically close window after saving values.
autoOutline(int, int, double, double, int) - Method in class ij.gui.Wand: Traces an object defined by lower and upper threshold values.
autoOutline(int, int, double, double) - Method in class ij.gui.Wand: Traces an object defined by lower and upper threshold values or an interior hole; whatever is found first ('legacy mode').
autoOutline(int, int, int, int) - Method in class ij.gui.Wand: This is a variation of legacy autoOutline that uses int threshold arguments.
autoOutline(int, int) - Method in class ij.gui.Wand: Traces the boundary of an area of uniform color, where 'startX' and 'startY' are somewhere inside the area.
autoOutline(int, int, double, int) - Method in class ij.gui.Wand: Traces the boundary of the area with pixel values within 'tolerance' of the value of the pixel at the starting location.
autoThreshold() - Method in class ij.process.ColorProcessor
autoThreshold() - Method in class ij.process.FloatProcessor: Not implemented.
autoThreshold() - Method in class ij.process.ImageProcessor: Converts the image to binary using an automatically determined threshold.

B

BARG - Static variable in class ij.io.FileInfo: 32-bit interleaved BARG (MCID).
BCOLOR - Static variable in class ij.Prefs
BEEP - Static variable in interface ij.macro.MacroConstants
BGR - Static variable in class ij.io.FileInfo: 24-bit interleaved BGR.
BICUBIC - Static variable in class ij.process.ImageProcessor: Interpolation methods
BILINEAR - Static variable in class ij.process.ImageProcessor: Interpolation methods
BITMAP - Static variable in class ij.io.FileInfo: 1-bit black and white.
BITS_PER_SAMPLE - Static variable in class ij.io.TiffDecoder
BIT_DEPTH - Static variable in interface ij.macro.MacroConstants
BLACK - Static variable in class ij.process.ImageProcessor: Value of pixels included in masks.
BLACK_AND_WHITE_LUT - Static variable in class ij.process.ImageProcessor
BMP - Static variable in class ij.io.FileInfo
BMP - Static variable in class ij.io.Opener
BMP_Reader - class ij.plugin.BMP_Reader.: This plugin reads BMP files.
BMP_Reader() - Constructor for class ij.plugin.BMP_Reader
BMP_Writer - class ij.plugin.BMP_Writer.: Implements the File/Save As/BMP command.
BMP_Writer() - Constructor for class ij.plugin.BMP_Writer
BOTTOM_MARGIN - Static variable in class ij.gui.Plot: the margin width below the plot frame
BOX - Static variable in class ij.gui.Plot: Display points using an box-shaped mark.
BOX - Static variable in class ij.gui.PlotWindow: Display points using an box-shaped mark.
BYTE - Static variable in class ij.plugin.filter.EDM: Output type: new 8-bit image
BYTE_OVERWRITE - Static variable in class ij.plugin.filter.EDM: Output type: overwrite current 8-bit image
BackgroundSubtracter - class ij.plugin.filter.BackgroundSubtracter.: Implements ImageJ's Subtract Background command.
BackgroundSubtracter() - Constructor for class ij.plugin.filter.BackgroundSubtracter
BatchConverter - class ij.plugin.BatchConverter.: This plugin implements the File/Batch/Convert command, which converts the images in a folder to a specified format.
BatchConverter() - Constructor for class ij.plugin.BatchConverter
BatchMeasure - class ij.plugin.BatchMeasure.: This plugin implements the File/Batch/Measure command, which measures all the images in a user-specified folder.
BatchMeasure() - Constructor for class ij.plugin.BatchMeasure
BatchProcesser - class ij.plugin.BatchProcesser.: This plugin implements the File/Batch/Macro and File/Batch/Virtual Stack commands.
BatchProcesser() - Constructor for class ij.plugin.BatchProcesser
Benchmark - class ij.plugin.filter.Benchmark.: Implements the Plugins/Utilities/Run Benchmark command.
Benchmark() - Constructor for class ij.plugin.filter.Benchmark
Binary - class ij.plugin.filter.Binary.: Implements the Erode, Dilate, Open, Close, Outline, Skeletonize and Fill Holes commands in the Process/Binary submenu.
Binary() - Constructor for class ij.plugin.filter.Binary
BinaryProcessor - class ij.process.BinaryProcessor.: This class processes binary images.
BinaryProcessor(ByteProcessor) - Constructor for class ij.process.BinaryProcessor: Creates a BinaryProcessor from a ByteProcessor.
BitBuffer - class ij.io.BitBuffer.: A class for reading arbitrary numbers of bits from a byte array.
BitBuffer(byte[]) - Constructor for class ij.io.BitBuffer
Blitter - interface ij.process.Blitter.: ImageJ bit blitting classes must implement this interface.
BrowserLauncher - class ij.plugin.BrowserLauncher.: This plugin implements the File/Import/URL command and the commands in the Help menu that open web pages.
BrowserLauncher() - Constructor for class ij.plugin.BrowserLauncher
ByteBlitter - class ij.process.ByteBlitter.: This class does bit blitting of byte images.
ByteBlitter(ByteProcessor) - Constructor for class ij.process.ByteBlitter: Constructs a ByteBlitter from a ByteProcessor.
ByteProcessor - class ij.process.ByteProcessor.: This is an 8-bit image and methods that operate on that image.
ByteProcessor(Image) - Constructor for class ij.process.ByteProcessor: Creates a ByteProcessor from an AWT Image.
ByteProcessor(int, int) - Constructor for class ij.process.ByteProcessor: Creates a blank ByteProcessor of the specified dimensions.
ByteProcessor(int, int, byte[], ColorModel) - Constructor for class ij.process.ByteProcessor: Creates a ByteProcessor from a pixel array and IndexColorModel.
ByteProcessor(BufferedImage) - Constructor for class ij.process.ByteProcessor: Creates a ByteProcessor from a TYPE_BYTE_GRAY BufferedImage.
ByteStatistics - class ij.process.ByteStatistics.: 8-bit image statistics, including histogram.
ByteStatistics(ImageProcessor) - Constructor for class ij.process.ByteStatistics: Construct an ImageStatistics object from a ByteProcessor using the standard measurement options (area, mean, mode, min and max) and no calibration.
ByteStatistics(ImageProcessor, int, Calibration) - Constructor for class ij.process.ByteStatistics: Constructs a ByteStatistics object from a ByteProcessor using the specified measurement and calibration.
bLUT1 - Variable in class ij.process.ImageProcessor
bLUT2 - Variable in class ij.process.ImageProcessor
backgroundColor - Static variable in class ij.ImageJ
baseCM - Variable in class ij.process.ImageProcessor
batchMode - Static variable in class ij.macro.Interpreter
beep() - Static method in class ij.IJ: Emits an audio beep.
binSize - Variable in class ij.process.ImageStatistics
blackBackground - Static variable in class ij.Prefs: Backgound is black in binary images
blackCanvas - Static variable in class ij.Prefs: Use black image border.
blue - Variable in class ij.plugin.filter.RGBStackSplitter: These are the three stacks created by the split(ImageStack) method.
blues - Variable in class ij.io.FileInfo
blur(ImageProcessor, double) - Method in class ij.plugin.filter.GaussianBlur: Gaussian Filtering of an ImageProcessor.
blur1Direction(FloatProcessor, double, double, boolean, int) - Method in class ij.plugin.filter.GaussianBlur: Blur an image in one direction (x or y) by a Gaussian.
blurFloat(FloatProcessor, double, double, double) - Method in class ij.plugin.filter.GaussianBlur: Gaussian Filtering of a FloatProcessor.
blurGaussian(ImageProcessor, double, double, double) - Method in class ij.plugin.filter.GaussianBlur: Gaussian Filtering of an ImageProcessor.
boldFont - Variable in class ij.process.ImageProcessor
buildControlDialog(int, int) - Method in class ij.plugin.ZProjector: Builds dialog to query users for projection parameters.
button - Variable in class ij.gui.MessageDialog
button - Variable in class ij.gui.WaitForUserDialog

C

CALCULATOR - Static variable in interface ij.macro.MacroConstants
CALIBRATE - Static variable in interface ij.macro.MacroConstants
CALL - Static variable in interface ij.macro.MacroConstants
CANCELED - Static variable in class ij.IJ
CENTER_JUSTIFY - Static variable in class ij.process.ImageProcessor: Center justify text.
CENTER_OF_MASS - Static variable in interface ij.measure.Measurements
CENTROID - Static variable in interface ij.measure.Measurements
CHANGE_VALUES - Static variable in interface ij.macro.MacroConstants
CHANNEL - Static variable in class ij.measure.ResultsTable
CHAR_CODE_AT - Static variable in interface ij.macro.MacroConstants
CHECK_AVAILABLE_MEMORY - Static variable in class ij.gui.NewImage
CIRCLE - Static variable in class ij.gui.Plot: Display points using a circle 5 pixels in diameter.
CIRCLE - Static variable in class ij.gui.PlotWindow: Display points using a circle 5 pixels in diameter.
CIRCULARITY - Static variable in interface ij.measure.Measurements
CIRCULARITY - Static variable in class ij.measure.ResultsTable
CLEAR_WORKSHEET - Static variable in class ij.plugin.filter.ParticleAnalyzer: Clear ImageJ console before starting.
CLOSE - Static variable in interface ij.macro.MacroConstants
CLOSED - Static variable in class ij.ImagePlus
COLOR - Static variable in class ij.CompositeImage
COLOR8 - Static variable in class ij.io.FileInfo: 8-bit unsigned integer with color lookup table.
COLOR_256 - Static variable in class ij.ImagePlus: 8-bit indexed color
COLOR_MAP - Static variable in class ij.io.TiffDecoder
COLOR_RGB - Static variable in class ij.ImagePlus: 32-bit RGB color
COLUMN_IN_USE - Static variable in class ij.measure.ResultsTable
COLUMN_NOT_FOUND - Static variable in class ij.measure.ResultsTable
COMMAND_IN_USE - Static variable in class ij.Menus
COMMAND_NOT_FOUND - Static variable in class ij.Menus
COMPOSITE - Static variable in class ij.CompositeImage
COMPOSITE - Static variable in class ij.gui.Roi
COMPOUND_FILTER - Static variable in class ij.Undo
COMPOUND_FILTER_DONE - Static variable in class ij.Undo
COMPRESSION - Static variable in class ij.io.TiffDecoder
COMPRESSION_NONE - Static variable in class ij.io.FileInfo
COMPRESSION_UNKNOWN - Static variable in class ij.io.FileInfo
CONSTRUCTING - Static variable in class ij.gui.Roi
CONVERT_TO_FLOAT - Static variable in interface ij.plugin.filter.PlugInFilter: Set this flag to have the ImageProcessor that is passed to the run() method converted to a FloatProcessor.
COPY - Static variable in interface ij.process.Blitter: dst=src
COPY_INVERTED - Static variable in interface ij.process.Blitter: dst=255-src (8-bits and RGB)
COPY_TRANSPARENT - Static variable in interface ij.process.Blitter: Copies with white pixels transparent.
COPY_ZERO_TRANSPARENT - Static variable in interface ij.process.Blitter: Copies with zero pixels transparent.
COS - Static variable in interface ij.macro.MacroConstants
COUNT - Static variable in class ij.plugin.filter.MaximumFinder: Do not create an image, just count maxima and add count to Results table
CROSS - Static variable in class ij.gui.Plot: Display points using an cross-shaped mark.
CROSS - Static variable in class ij.gui.PlotWindow: Display points using an cross-shaped mark.
CROSSHAIR - Static variable in class ij.gui.Toolbar
CUSTOM - Static variable in class ij.io.Opener
CUSTOM - Static variable in class ij.measure.Calibration
Calibration - class ij.measure.Calibration.: Calibration objects contain an image's spatial and density calibration data.
Calibration(ImagePlus) - Constructor for class ij.measure.Calibration: Constructs a new Calibration object using the default values.
Calibration() - Constructor for class ij.measure.Calibration: Constructs a new Calibration object using the default values.
CalibrationBar - class ij.plugin.filter.CalibrationBar.: This plugin displays a calibration bar on the active image.
CalibrationBar() - Constructor for class ij.plugin.filter.CalibrationBar
Calibrator - class ij.plugin.filter.Calibrator.: Implements the Analyze/Calibrate command.
Calibrator() - Constructor for class ij.plugin.filter.Calibrator
CanvasResizer - class ij.plugin.CanvasResizer.: This plugin implements the Image/Adjust/Canvas Size command.
CanvasResizer() - Constructor for class ij.plugin.CanvasResizer
Channels - class ij.plugin.frame.Channels.: Displays the ImageJ Channels window.
Channels() - Constructor for class ij.plugin.frame.Channels
ClassChecker - class ij.plugin.ClassChecker.: Checks for duplicate class and JAR files in the plugins folders and deletes older duplicates.
ClassChecker() - Constructor for class ij.plugin.ClassChecker
Clipboard - class ij.plugin.Clipboard.: Copies and pastes images to the clipboard.
Clipboard() - Constructor for class ij.plugin.Clipboard
ColorBlitter - class ij.process.ColorBlitter.: This class does bit blitting of RGB images.
ColorBlitter(ColorProcessor) - Constructor for class ij.process.ColorBlitter: Constructs a ColorBlitter from a ColorProcessor.
ColorChooser - class ij.gui.ColorChooser.: Displays a dialog that allows the user to select a color using three sliders.
ColorChooser(String, Color, boolean) - Constructor for class ij.gui.ColorChooser: Constructs a ColorChooser using the specified title and initial color.
ColorPicker - class ij.plugin.ColorPicker.: Implements the Image/Color/Color Picker command.
ColorPicker() - Constructor for class ij.plugin.ColorPicker
ColorProcessor - class ij.process.ColorProcessor.: This is an 32-bit RGB image and methods that operate on that image..
ColorProcessor(Image) - Constructor for class ij.process.ColorProcessor: Creates a ColorProcessor from an AWT Image.
ColorProcessor(int, int) - Constructor for class ij.process.ColorProcessor: Creates a blank ColorProcessor of the specified dimensions.
ColorProcessor(int, int, int[]) - Constructor for class ij.process.ColorProcessor: Creates a ColorProcessor from a pixel array.
ColorStatistics - class ij.process.ColorStatistics.: RGB image statistics, including histogram.
ColorStatistics(ImageProcessor) - Constructor for class ij.process.ColorStatistics: Construct an ImageStatistics object from a ColorProcessor using the standard measurement options (area, mean, mode, min and max).
ColorStatistics(ImageProcessor, int, Calibration) - Constructor for class ij.process.ColorStatistics: Constructs a ColorStatistics object from a ColorProcessor using the specified measurement options.
Colors - class ij.plugin.Colors.: This plugin implements most of the Edit/Options/Colors command.
Colors() - Constructor for class ij.plugin.Colors
CommandFinder - class ij.plugin.CommandFinder.
CommandFinder() - Constructor for class ij.plugin.CommandFinder
CommandListener - interface ij.CommandListener.: Plugins that implement this interface are notified when ImageJ is about to run a menu command.
CommandLister - class ij.plugin.CommandLister.: Lists ImageJ commands or keyboard shortcuts in a text window.
CommandLister() - Constructor for class ij.plugin.CommandLister
Commands - class ij.plugin.Commands.: Runs File and Window menu commands.
Commands() - Constructor for class ij.plugin.Commands
Compiler - class ij.plugin.Compiler.: Compiles and runs plugins using the javac compiler.
Compiler() - Constructor for class ij.plugin.Compiler
CompositeConverter - class ij.plugin.CompositeConverter.: This plugin imlements the Image/Color/Make Composite command.
CompositeConverter() - Constructor for class ij.plugin.CompositeConverter
CompositeImage - class ij.CompositeImage.
CompositeImage(ImagePlus) - Constructor for class ij.CompositeImage
CompositeImage(ImagePlus, int) - Constructor for class ij.CompositeImage
Concatenator - class ij.plugin.Concatenator.: This plugin, which concatenates two images or stacks, implements the Image/Stacks/Concatenate command.
Concatenator() - Constructor for class ij.plugin.Concatenator
ContrastAdjuster - class ij.plugin.frame.ContrastAdjuster.: This plugin implements the Brightness/Contrast, Window/level and Color Balance commands, all in the Image/Adjust sub-menu.
ContrastAdjuster() - Constructor for class ij.plugin.frame.ContrastAdjuster
ContrastEnhancer - class ij.plugin.ContrastEnhancer.: Implements ImageJ's Process/Enhance Contrast command.
ContrastEnhancer() - Constructor for class ij.plugin.ContrastEnhancer
ControlPanel - class ij.plugin.ControlPanel.: ControlPanel.
ControlPanel() - Constructor for class ij.plugin.ControlPanel
Converter - class ij.plugin.Converter.: Implements the conversion commands in the Image/Type submenu.
Converter() - Constructor for class ij.plugin.Converter
Convolver - class ij.plugin.filter.Convolver.: This plugin convolves images using user user defined kernels.
Convolver() - Constructor for class ij.plugin.filter.Convolver
CurveFitter - class ij.measure.CurveFitter.: Curve fitting class based on the Simplex method described in the article "Fitting Curves to Data" in the May 1984 issue of Byte magazine, pages 340-362.
CurveFitter(double[], double[]) - Constructor for class ij.measure.CurveFitter: Construct a new CurveFitter.
c2hex(Color) - Static method in class ij.util.Tools: Converts a Color to an 7 byte hex string starting with '#'.
cTable - Variable in class ij.process.ImageProcessor
cachedMask - Variable in class ij.gui.Roi
cal - Variable in class ij.gui.HistogramWindow
cal - Variable in class ij.process.ImageStatistics
calculate(String, ImagePlus, ImagePlus) - Method in class ij.plugin.ImageCalculator
calibrate(ImagePlus) - Method in class ij.plugin.filter.Calibrator
calibrated() - Method in class ij.measure.Calibration: Returns true if this image is density calibrated.
calibrationFunction - Variable in class ij.io.FileInfo
canEnlarge(int, int) - Method in class ij.gui.ImageCanvas
cancelPressed() - Method in class ij.gui.SaveChangesDialog: Returns true if the user dismissed dialog by pressing "Cancel".
cancelPressed() - Method in class ij.gui.YesNoCancelDialog: Returns true if the user dismissed dialog by pressing "Cancel".
captureImage() - Method in class ij.plugin.ScreenGrabber: Captures the active image window and returns it as an ImagePlus.
captureScreen() - Method in class ij.plugin.ScreenGrabber: Captures the entire screen and returns it as an ImagePlus.
center(Window) - Static method in class ij.gui.GUI: Positions the specified window in the center of the screen.
center - Variable in class ij.gui.Roi
centerDialog(boolean) - Method in class ij.gui.GenericDialog: Display dialog centered on the primary screen?
centerNextImage() - Static method in class ij.gui.ImageWindow: Causes the next image to be opened to be centered on the screen and displayed without informational text above the image.
changeFont(Font) - Method in class ij.gui.Plot: Changes the font.
changeFont(Font) - Method in class ij.gui.PlotWindow: Changes the font.
changes - Variable in class ij.ImagePlus: True if any changes have been made to this image.
channelLuts - Variable in class ij.io.FileInfo
channelSelector - Variable in class ij.gui.StackWindow
checkArguments(Object[]) - Method in class ij.macro.ExtensionDescriptor
checkForDuplicateName - Static variable in class ij.WindowManager
checkbox - Variable in class ij.gui.GenericDialog
choice - Variable in class ij.gui.GenericDialog
clear(ImageProcessor) - Method in class ij.plugin.filter.Filler
clear() - Method in class ij.text.TextPanel: Deletes all the lines.
clearOutside(ImageProcessor) - Method in class ij.plugin.filter.Filler: Obsolete; replaced by ImageProcessor.fillOutside(Roi).
clearSelection() - Method in class ij.text.TextPanel: Deletes the selected lines.
clipHeight - Variable in class ij.gui.Roi
clipWidth - Variable in class ij.gui.Roi
clipX - Variable in class ij.gui.Roi
clipXMax - Variable in class ij.process.ImageProcessor
clipXMin - Variable in class ij.process.ImageProcessor
clipY - Variable in class ij.gui.Roi
clipYMax - Variable in class ij.process.ImageProcessor
clipYMin - Variable in class ij.process.ImageProcessor
clipboard - Variable in class ij.gui.Roi
clone() - Method in class ij.ImagePlus
clone() - Method in class ij.gui.PolygonRoi: Returns a copy of this PolygonRoi.
clone() - Method in class ij.gui.Roi: Returns a copy of this roi.
clone() - Method in class ij.gui.ShapeRoi: Returns a deep copy of this.
clone() - Method in class ij.io.FileInfo
clone() - Method in class ij.measure.Calibration
clone() - Method in class ij.measure.ResultsTable: Creates a copy of this ResultsTable.
clone() - Method in class ij.process.LUT
close() - Method in class ij.ImagePlus: Closes this image and sets the ImageProcessor to null.
close() - Method in class ij.gui.ImageWindow: Removes this window from the window list and disposes of it.
close() - Method in class ij.gui.StackWindow
close() - Method in class ij.gui.WaitForUserDialog
close() - Method in class ij.io.RandomAccessStream
close() - Method in class ij.plugin.frame.Channels
close() - Method in class ij.plugin.frame.ContrastAdjuster: Overrides close() in PlugInFrame.
close() - Method in class ij.plugin.frame.Editor: Overrides close() in PlugInFrame.
close() - Method in class ij.plugin.frame.LineWidthAdjuster: Overrides close() in PlugInFrame.
close() - Method in class ij.plugin.frame.PasteController
close() - Method in class ij.plugin.frame.PlugInFrame: Closes this window.
close() - Method in class ij.plugin.frame.Recorder
close() - Method in class ij.plugin.frame.RoiManager: Overrides PlugInFrame.close().
close() - Method in class ij.plugin.frame.ThresholdAdjuster: Overrides close() in PlugInFrame.
close() - Method in class ij.text.TextWindow
closeAllWindows() - Static method in class ij.WindowManager: Closes all windows.
closed - Variable in class ij.gui.ImageWindow
cm - Variable in class ij.process.ImageProcessor
cm2 - Variable in class ij.process.ImageProcessor
coefficients - Variable in class ij.io.FileInfo
colors - Static variable in class ij.plugin.Colors
columnExists(int) - Method in class ij.measure.ResultsTable: Returns true if the specified column exists and is not empty.
combineHorizontally(ImageStack, ImageStack) - Method in class ij.plugin.StackCombiner
combineVertically(ImageStack, ImageStack) - Method in class ij.plugin.StackCombiner
commandExecuting(String) - Method in interface ij.CommandListener
commandExecuting(String) - Method in class ij.plugin.Orthogonal_Views
commandInUse(String) - Static method in class ij.Menus
commandPrefix - Static variable in class ij.plugin.MacroInstaller
compositeImage - Variable in class ij.ImagePlus
compression - Variable in class ij.io.FileInfo
concatenate(ImagePlus, ImagePlus, boolean) - Method in class ij.plugin.Concatenator
conjugateMultiply(FHT) - Method in class ij.process.FHT: Returns the image resulting from the point by point Hartley conjugate multiplication of this image and the specified image.
constrain - Variable in class ij.gui.Roi
contains(int, int) - Method in class ij.gui.Line
contains(int, int) - Method in class ij.gui.OvalRoi: Tests if the specified point is inside the boundary of this OvalRoi.
contains(int, int) - Method in class ij.gui.PointRoi: Returns true if (x,y) is one of the points in this collection.
contains(int, int) - Method in class ij.gui.PolygonRoi
contains(int, int) - Method in class ij.gui.Roi
contains(int, int) - Method in class ij.gui.ShapeRoi: Checks whether the specified coordinates are inside a on this ROI's shape boundaries.
contains(float, float) - Method in class ij.process.FloatPolygon: Returns 'true' if the point (x,y) is inside this polygon.
controlKeyDown() - Static method in class ij.IJ: Returns true if the control key is down.
convert(String) - Method in class ij.plugin.Converter: Converts the ImagePlus to the specified image type.
convert(int) - Method in class ij.process.MedianCut: Uses Heckbert's median-cut algorithm to divide the color space defined by "hist" into "maxcubes" cubes.
convertGrayJpegTo8Bits(ImagePlus) - Static method in class ij.io.Opener: If this image is grayscale, convert it to 8-bits.
convertHSBToRGB() - Method in class ij.process.ImageConverter: Converts a 3-slice (hue, saturation, brightness) 8-bit stack to RGB.
convertHyperstack(ImagePlus, ImagePlus) - Method in class ij.plugin.RGBStackConverter
convertImagesToStack() - Method in class ij.plugin.ImagesToStack
convertImagesToStack() - Method in class ij.plugin.StackEditor
convertOutputType(Variable, Object) - Static method in class ij.macro.ExtensionDescriptor
convertRGBStackToRGB() - Method in class ij.process.ImageConverter: Converts a 2 or 3 slice 8-bit stack to RGB.
convertRGBtoIndexedColor(int) - Method in class ij.process.ImageConverter: Converts an RGB image to 8-bits indexed color.
convertShortcutToCode(String) - Static method in class ij.Menus
convertStackToImages(ImagePlus) - Method in class ij.plugin.StackEditor
convertToByte(boolean) - Method in class ij.process.ImageProcessor: Returns an 8-bit version of this image as a ByteProcessor.
convertToByte(int) - Method in class ij.process.MedianCut: This is a version of convert that returns a ByteProcessor.
convertToByte() - Method in class ij.process.TypeConverter: Converts processor to a ByteProcessor.
convertToFloat() - Method in class ij.process.ImageProcessor: Returns a 32-bit float version of this image as a FloatProcessor.
convertToFloat(float[]) - Method in class ij.process.TypeConverter: Converts processor to a FloatProcessor.
convertToGray16() - Method in class ij.process.ImageConverter: Converts this ImagePlus to 16-bit grayscale.
convertToGray16() - Method in class ij.process.StackConverter: Converts this Stack to 16-bit grayscale.
convertToGray32() - Method in class ij.process.ImageConverter: Converts this ImagePlus to 32-bit grayscale.
convertToGray32() - Method in class ij.process.StackConverter: Converts this Stack to 32-bit (float) grayscale.
convertToGray8() - Method in class ij.process.ImageConverter: Converts this ImagePlus to 8-bit grayscale.
convertToGray8() - Method in class ij.process.StackConverter: Converts this Stack to 8-bit grayscale.
convertToHSB() - Method in class ij.process.ImageConverter: Converts an RGB image to a HSB (hue, saturation and brightness) stack.
convertToHSBHyperstack() - Method in class ij.process.StackConverter: Converts the stack (which must be RGB) to a 3 channel (hue, saturation and brightness) hyperstack.
convertToIndexedColor(int) - Method in class ij.process.StackConverter: Converts the stack to 8-bits indexed color.
convertToRGB() - Method in class ij.process.ImageConverter: Converts this ImagePlus to RGB.
convertToRGB() - Method in class ij.process.ImageProcessor: Returns an RGB version of this image as a ColorProcessor.
convertToRGB() - Method in class ij.process.StackConverter: Converts the Stack to RGB.
convertToRGB() - Method in class ij.process.TypeConverter: Converts processor to a ColorProcessor.
convertToRGBHyperstack() - Method in class ij.process.StackConverter: Converts the stack (which must be RGB) to a 3 channel (red, green and blue) hyperstack.
convertToRGBStack() - Method in class ij.process.ImageConverter: Converts an RGB image to an RGB (red, green and blue) stack.
convertToShort(boolean) - Method in class ij.process.ImageProcessor: Returns a 16-bit version of this image as a ShortProcessor.
convertToShort() - Method in class ij.process.TypeConverter: Converts processor to a ShortProcessor.
convertVariable(Interpreter, int, Variable) - Static method in class ij.macro.ExtensionDescriptor
convolve(ImageProcessor, float[], int, int) - Method in class ij.plugin.filter.Convolver: Convolves ip with a kernel of width kw and height kh.
convolve(float[], int, int) - Method in class ij.process.ByteProcessor: Performs a convolution operation using the specified kernel.
convolve(float[], int, int) - Method in class ij.process.ColorProcessor: Performs a convolution operation using the specified kernel.
convolve(float[], int, int) - Method in class ij.process.FloatProcessor: Performs a convolution operation using the specified kernel.
convolve(float[], int, int) - Method in class ij.process.ImageProcessor: Performs a convolution operation using the specified kernel.
convolve(float[], int, int) - Method in class ij.process.ShortProcessor: Performs a convolution operation using the specified kernel.
convolve3x3(int[]) - Method in class ij.process.ByteProcessor: 3x3 convolution contributed by Glynne Casteel.
convolve3x3(int[]) - Method in class ij.process.ColorProcessor: 3x3 convolution contributed by Glynne Casteel.
convolve3x3(int[]) - Method in class ij.process.FloatProcessor: Does 3x3 convolution.
convolve3x3(int[]) - Method in class ij.process.ImageProcessor: Convolves the image or ROI with the specified 3x3 integer convolution kernel.
convolve3x3(int[]) - Method in class ij.process.ShortProcessor: Does 3x3 convolution.
convolveFloat(ImageProcessor, float[], int, int) - Method in class ij.plugin.filter.Convolver: Convolves the float image ip with a kernel of width kw and height kh.
convolveLine(float[], float[], float[][], int, int, int, int, int, int) - Method in class ij.plugin.filter.GaussianBlur: Convolve a line with a symmetric kernel and write to a separate array, possibly the pixels array of a FloatProcessor (as a row or column or part thereof)
copy(boolean) - Method in class ij.ImagePlus: Copies the contents of the current selection to the internal clipboard.
copy - Variable in class ij.gui.HistogramWindow
copy(boolean) - Method in class ij.gui.ImageWindow: Copies the current ROI to the clipboard.
copy() - Method in class ij.measure.Calibration: Returns a clone of this object.
copyBits(ImageProcessor, int, int, int) - Method in interface ij.process.Blitter: Copies the image in 'src' to (x,y) using the specified mode.
copyBits(ImageProcessor, int, int, int) - Method in class ij.process.ByteBlitter: Copies the byte image in 'ip' to (x,y) using the specified mode.
copyBits(ImageProcessor, int, int, int) - Method in class ij.process.ByteProcessor: Copies the image contained in 'ip' to (xloc, yloc) using one of the transfer modes defined in the Blitter interface.
copyBits(ImageProcessor, int, int, int) - Method in class ij.process.ColorBlitter: Copies the RGB image in 'ip' to (x,y) using the specified mode.
copyBits(ImageProcessor, int, int, int) - Method in class ij.process.ColorProcessor: Copies the image contained in 'ip' to (xloc, yloc) using one of the transfer modes defined in the Blitter interface.
copyBits(ImageProcessor, int, int, int) - Method in class ij.process.FloatBlitter: Copies the float image in 'ip' to (x,y) using the specified mode.
copyBits(ImageProcessor, int, int, int) - Method in class ij.process.FloatProcessor: Copies the image contained in 'ip' to (xloc, yloc) using one of the transfer modes defined in the Blitter interface.
copyBits(ImageProcessor, int, int, int) - Method in class ij.process.ImageProcessor: Copies the image contained in 'ip' to (xloc, yloc) using one of the transfer modes defined in the Blitter interface.
copyBits(ImageProcessor, int, int, int) - Method in class ij.process.ShortBlitter: Copies the 16-bit image in 'ip' to (x,y) using the specified mode.
copyBits(ImageProcessor, int, int, int) - Method in class ij.process.ShortProcessor: Copies the image contained in 'ip' to (xloc, yloc) using one of the transfer modes defined in the Blitter interface.
copyBits(ImageProcessor, int, int, int) - Method in class ij.process.StackProcessor
copyBits(ImageStack, int, int, int) - Method in class ij.process.StackProcessor
copyColumnHeaders - Static variable in class ij.Prefs: Include column headers when copying tables to clipboard.
copyLuts(ImagePlus) - Method in class ij.CompositeImage: Copies the LUTs and display mode of 'imp' to this image.
copyScale(ImagePlus) - Method in class ij.ImagePlus: Copies the calibration of the specified image to this image.
copySelection() - Method in class ij.text.TextPanel: Copies the current selection to the system clipboard.
copyToClipboard() - Method in class ij.gui.HistogramWindow
count - Variable in class ij.gui.HistogramWindow
create(String, String) - Method in class ij.plugin.frame.Editor
create8BitImage() - Method in class ij.process.FloatProcessor
createBlankImage(int, int) - Static method in class ij.gui.GUI: Creates a white AWT Image image of the specified size.
createByteImage(String, int, int, int, int) - Static method in class ij.gui.NewImage
createColorModel(FileInfo) - Method in class ij.io.FileOpener: Returns an IndexColorModel for the image specified by this FileInfo.
createComposite(int, int, int, ImageStack[], boolean) - Method in class ij.plugin.RGBStackMerge
createEmptyStack() - Method in class ij.ImagePlus: Returns an empty image stack that has the same width, height and color table as this image.
createFloatImage(String, int, int, int, int) - Static method in class ij.gui.NewImage
createGrayscaleColorModel(boolean) - Static method in class ij.LookUpTable
createHyperStack(String, int, int, int, int) - Method in class ij.ImagePlus: Returns a new hyperstack with this image's attributes (e.g., width, height, spatial scale), but no image data.
createImage(String, String, int, int, int) - Static method in class ij.IJ: Creates a new imagePlus.
createImage(String, int, int, int, int, int) - Static method in class ij.gui.NewImage
createImage() - Method in class ij.process.ByteProcessor
createImage() - Method in class ij.process.ColorProcessor
createImage() - Method in class ij.process.FloatProcessor
createImage() - Method in class ij.process.ImageProcessor: Returns a copy of this image is the form of an AWT Image.
createImage() - Method in class ij.process.ShortProcessor: Create an 8-bit AWT image by scaling pixels in the range min-max to 0-255.
createImagePlus() - Method in class ij.ImagePlus: Returns a new ImagePlus with this image's attributes (e.g.
createInputStream(FileInfo) - Method in class ij.io.FileOpener: Returns an InputStream for the image described by this FileInfo.
createInvertedLut() - Method in class ij.process.LUT
createLut() - Method in class ij.ImagePlus: Creates a LookUpTable object that corresponds to this image.
createLutFromColor(Color) - Method in class ij.CompositeImage
createMacro(String) - Method in class ij.plugin.NewPlugin
createMacro(String, String) - Method in class ij.plugin.frame.Editor
createNewRoi(int, int) - Method in class ij.ImagePlus: Starts the process of creating a new selection, where sx and sy are the starting screen coordinates.
createPlugin(String, int, String) - Method in class ij.plugin.NewPlugin
createProcessor(int, int) - Method in class ij.process.ByteProcessor: Returns a new, blank ByteProcessor with the specified width and height.
createProcessor(int, int) - Method in class ij.process.ColorProcessor: Returns a new, blank ColorProcessor with the specified width and height.
createProcessor(int, int) - Method in class ij.process.FloatProcessor: Returns a new, blank FloatProcessor with the specified width and height.
createProcessor(int, int) - Method in class ij.process.ImageProcessor: Returns a new, blank processor with the specified width and height.
createProcessor(int, int) - Method in class ij.process.ShortProcessor: Returns a new, blank ShortProcessor with the specified width and height.
createRGBImage(String, int, int, int, int) - Static method in class ij.gui.NewImage
createShortImage(String, int, int, int, int) - Static method in class ij.gui.NewImage: Creates an unsigned short image.
createSubtitle() - Method in class ij.gui.ImageWindow: Creates the subtitle.
createSubtitle() - Method in class ij.gui.StackWindow
createUnsignedShortImage(String, int, int, int, int) - Static method in class ij.gui.NewImage: Obsolete.
createWindow() - Method in class ij.gui.ProfilePlot: Displays this profile plot in a window.
crop() - Method in class ij.process.ByteProcessor
crop() - Method in class ij.process.ColorProcessor
crop() - Method in class ij.process.FloatProcessor
crop() - Method in class ij.process.ImageProcessor: Creates a new processor containing an image that corresponds to the current ROI.
crop() - Method in class ij.process.ShortProcessor
crop(int, int, int, int) - Method in class ij.process.StackProcessor: Crops the stack to the specified rectangle.
crosshairCursor - Static variable in class ij.gui.ImageCanvas
currentMemory() - Static method in class ij.IJ: Returns the amount of memory currently being used by ImageJ.
currentSlice - Variable in class ij.ImagePlus
cx - Variable in class ij.process.ImageProcessor
cy - Variable in class ij.process.ImageProcessor

D

D2S - Static variable in interface ij.macro.MacroConstants
DATE_TIME - Static variable in class ij.io.TiffDecoder
DEBUG - Static variable in interface ij.macro.MacroConstants
DEBUG_LOC_KEY - Static variable in class ij.text.TextWindow
DEFAULT_FLAGS - Static variable in class ij.gui.Plot: the default flags
DEFAULT_JPEG_QUALITY - Static variable in class ij.io.FileSaver
DEFAULT_PORT - Static variable in class ij.ImageJ: Address of socket where Image accepts commands
DEFAULT_QUALITY - Static variable in class ij.plugin.JpegWriter
DESPECKLE - Static variable in class ij.plugin.filter.RankFilters
DIALOG - Static variable in interface ij.macro.MacroConstants
DICOM - Static variable in class ij.io.FileInfo
DICOM - Static variable in class ij.io.Opener
DICOM - class ij.plugin.DICOM.: This plugin decodes DICOM files.
DICOM() - Constructor for class ij.plugin.DICOM: Default constructor.
DICOM(InputStream) - Constructor for class ij.plugin.DICOM: Constructs a DICOM reader that using an InputStream.
DICOM(BufferedInputStream) - Constructor for class ij.plugin.DICOM: Constructs a DICOM reader that using an BufferredInputStream.
DICOM_Sorter - class ij.plugin.DICOM_Sorter.
DICOM_Sorter() - Constructor for class ij.plugin.DICOM_Sorter
DIFFERENCE - Static variable in interface ij.process.Blitter: dst=abs(dst-src)
DIR_IMAGE - Static variable in class ij.Prefs
DISPLAY_SUMMARY - Static variable in class ij.plugin.filter.ParticleAnalyzer: Display a summary.
DIVIDE - Static variable in interface ij.process.Blitter: dst=dst/src
DIV_BY_ZERO_VALUE - Static variable in class ij.Prefs
DIV_EQUAL - Static variable in interface ij.macro.MacroConstants
DO - Static variable in interface ij.macro.MacroConstants
DOES_16 - Static variable in interface ij.plugin.filter.PlugInFilter: Set this flag if the filter handles 16-bit images.
DOES_32 - Static variable in interface ij.plugin.filter.PlugInFilter: Set this flag if the filter handles float images.
DOES_8C - Static variable in interface ij.plugin.filter.PlugInFilter: Set this flag if the filter handles 8-bit indexed color images.
DOES_8G - Static variable in interface ij.plugin.filter.PlugInFilter: Set this flag if the filter handles 8-bit grayscale images.
DOES_ALL - Static variable in interface ij.plugin.filter.PlugInFilter: Set this flag if the filter handles all types of images.
DOES_RGB - Static variable in interface ij.plugin.filter.PlugInFilter: Set this flag if the filter handles RGB images.
DOES_STACKS - Static variable in interface ij.plugin.filter.PlugInFilter: Set this flag if the filter wants its run() method to be called for all the slices in a stack.
DONE - Static variable in interface ij.plugin.filter.PlugInFilter: Set this flag if the filter does not want its run method called.
DOT - Static variable in class ij.gui.Plot: Display points using a single pixel.
DOUBLE_CLICK_THRESHOLD - Static variable in class ij.gui.Toolbar
DO_COMMAND - Static variable in interface ij.macro.MacroConstants
DO_WAND - Static variable in interface ij.macro.MacroConstants
DRAW_LINE - Static variable in interface ij.macro.MacroConstants
DRAW_OVAL - Static variable in interface ij.macro.MacroConstants
DRAW_RECT - Static variable in interface ij.macro.MacroConstants
DRAW_STRING - Static variable in interface ij.macro.MacroConstants
DROPPER - Static variable in class ij.gui.Toolbar
DUMP - Static variable in interface ij.macro.MacroConstants
DialogListener - interface ij.gui.DialogListener.: PlugIns or PlugInFilters that want to listen to changes in a GenericDialog without adding listeners for each dialog field should implement this method.
DirectoryChooser - class ij.io.DirectoryChooser.: This class displays a dialog box that allows the user can select a directory.
DirectoryChooser(String) - Constructor for class ij.io.DirectoryChooser: Display a dialog using the specified title.
Distribution - class ij.plugin.Distribution.: This plugin implements the Analyze/Distribution command.
Distribution() - Constructor for class ij.plugin.Distribution
DragAndDrop - class ij.plugin.DragAndDrop.: This class opens images, roi's, luts and text files dragged and dropped on the "ImageJ" window.
DragAndDrop() - Constructor for class ij.plugin.DragAndDrop
Duplicater - class ij.plugin.filter.Duplicater.: This plugin implements ImageJ's Image/Duplicate command.
Duplicater() - Constructor for class ij.plugin.filter.Duplicater
d2s(double) - Static method in class ij.IJ: Converts a number to a formatted string using 2 digits to the right of the decimal point.
d2s(double, int) - Static method in class ij.IJ: Converts a number to a rounded formatted string.
d2s(double, int) - Static method in class ij.measure.ResultsTable: This is a version of IJ.d2s() that uses scientific notation for small numbes that would otherwise display as zero.
darkBlue - Static variable in class ij.plugin.filter.Analyzer
debug(Interpreter, int) - Method in class ij.plugin.frame.Editor
debugInfo - Variable in class ij.io.FileInfo
debugMode - Static variable in class ij.IJ
debugMode - Variable in class ij.io.TiffDecoder
decimalPlaces - Variable in class ij.gui.HistogramWindow
decodeDescriptionString(FileInfo) - Method in class ij.io.FileOpener
decodeToken(int) - Method in class ij.macro.Program
defaultColorModel - Static variable in class ij.process.ImageProcessor
defaultCursor - Static variable in class ij.gui.ImageCanvas
defaultDirectory - Static variable in class ij.gui.HistogramWindow
defaultText - Variable in class ij.gui.GenericDialog
defaultValues - Variable in class ij.gui.GenericDialog
degreeSymbol - Static variable in class ij.IJ
deleteLastSlice() - Method in class ij.ImageStack: Deletes the last slice in the stack.
deleteLastSlice() - Method in class ij.VirtualStack: Deletes the last slice in the stack.
deleteRow(int) - Method in class ij.measure.ResultsTable: Deletes the specified row.
deleteSlice(int) - Method in class ij.ImageStack: Deletes the specified slice, were 1<=n<=nslices.
deleteSlice(int) - Method in class ij.VirtualStack: Deletes the specified slice, were 1<=n<=nslices.
deleteSlice(int) - Method in class ij.plugin.AVI_Reader: Deletes the specified image from this virtual stack (if it is one), where 1<=n<=nslices.
deleteSlice(int) - Method in class ij.plugin.FileInfoVirtualStack: Deletes the specified image, were 1<=n<=nImages.
deleteSlice(int) - Method in class ij.plugin.ListVirtualStack: Deletes the specified image, were 1<=n<=nslices.
description - Variable in class ij.io.FileInfo
destroy() - Method in class ij.ImageJApplet
dfht3(float[], int, boolean, int) - Method in class ij.process.FHT: Performs an optimized 1D FHT.
dialogItemChanged(GenericDialog, AWTEvent) - Method in interface ij.gui.DialogListener: This method is invoked by a Generic Dialog if any of the inputs have changed (CANCEL does not trigger it; OK and running the dialog from a macro only trigger the first DialogListener added to a GenericDialog).
dialogItemChanged(GenericDialog, AWTEvent) - Method in class ij.plugin.HyperStackReducer
dialogItemChanged(GenericDialog, AWTEvent) - Method in class ij.plugin.RGBStackConverter
dialogItemChanged(GenericDialog, AWTEvent) - Method in class ij.plugin.SpecifyROI
dialogItemChanged(GenericDialog, AWTEvent) - Method in class ij.plugin.filter.BackgroundSubtracter
dialogItemChanged(GenericDialog, AWTEvent) - Method in class ij.plugin.filter.Binary
dialogItemChanged(GenericDialog, AWTEvent) - Method in class ij.plugin.filter.Convolver
dialogItemChanged(GenericDialog, AWTEvent) - Method in class ij.plugin.filter.GaussianBlur: Listener to modifications of the input fields of the dialog
dialogItemChanged(GenericDialog, AWTEvent) - Method in class ij.plugin.filter.ImageMath
dialogItemChanged(GenericDialog, AWTEvent) - Method in class ij.plugin.filter.MaximumFinder: Read the parameters (during preview or after showing the dialog)
dialogItemChanged(GenericDialog, AWTEvent) - Method in class ij.plugin.filter.PlugInFilterRunner: The listener to any change in the dialog.
dialogItemChanged(GenericDialog, AWTEvent) - Method in class ij.plugin.filter.RankFilters
dialogItemChanged(GenericDialog, AWTEvent) - Method in class ij.plugin.filter.Rotator
dialogItemChanged(GenericDialog, AWTEvent) - Method in class ij.plugin.filter.StackLabeler
dialogItemChanged(GenericDialog, AWTEvent) - Method in class ij.plugin.filter.Translator
dialogItemChanged(GenericDialog, AWTEvent) - Method in class ij.plugin.filter.UnsharpMask
digits - Variable in class ij.gui.HistogramWindow
dilate() - Method in class ij.process.ByteProcessor
dilate(int, int) - Method in class ij.process.ByteProcessor
dilate() - Method in class ij.process.ColorProcessor
dilate() - Method in class ij.process.FloatProcessor: Not implemented.
dilate() - Method in class ij.process.ImageProcessor: Dilates the image or ROI using a 3x3 minimum filter.
dilate() - Method in class ij.process.ShortProcessor: Not implemented.
directory - Variable in class ij.io.FileInfo
disableDensityCalibration() - Method in class ij.measure.Calibration
disablePathRecording() - Static method in class ij.plugin.frame.Recorder: Temporarily disables path recording.
disablePopupMenu(boolean) - Method in class ij.gui.ImageCanvas: Disable/enable popup menu.
disableRowLabels() - Method in class ij.measure.ResultsTable: Set the row label column to null.
disableUndo - Static variable in class ij.Prefs: Disable Edit/Undo command.
dispatch(Functions) - Method in class ij.macro.ExtensionDescriptor
display(String, String) - Method in class ij.plugin.frame.Editor
displayComplex - Static variable in class ij.plugin.FFT
displayFHT - Static variable in class ij.plugin.FFT
displayRanges - Variable in class ij.io.FileInfo
displayRawPS - Static variable in class ij.plugin.FFT
displayResults() - Method in class ij.plugin.filter.Analyzer: Writes the last row in the system results table to the Results window.
displaySummary - Variable in class ij.plugin.filter.ParticleAnalyzer
divide(FHT) - Method in class ij.process.FHT: Returns the image resulting from the point by point Hartley division of this image by the specified image.
divideByZeroValue - Static variable in class ij.process.FloatBlitter
dmode - Variable in class ij.process.ImageStatistics
doCommand(String) - Static method in class ij.IJ: Starts executing a menu command in a separete thread and returns immediately.
doCustomFit(String, double[], boolean) - Method in class ij.measure.CurveFitter
doFiltering(FloatProcessor, int, int[], int, int, float) - Method in class ij.plugin.filter.RankFilters: Filter a FloatProcessor according to filterType
doFit(int) - Method in class ij.measure.CurveFitter: Perform curve fitting with the simplex method doFit(fitType) just does the fit doFit(fitType, true) pops up a dialog allowing control over simplex parameters alpha is reflection coefficient (-1) beta is contraction coefficient (0.5) gamma is expansion coefficient (2)
doFit(int, boolean) - Method in class ij.measure.CurveFitter
doFit(int) - Method in class ij.plugin.frame.Fitter
doMath(ImagePlus, ImagePlus) - Method in class ij.plugin.FFTMath
doOptions() - Method in class ij.plugin.filter.Profiler
doProjection() - Method in class ij.plugin.ZProjector: Performs actual projection using specified method.
doProjections(ImagePlus) - Method in class ij.plugin.filter.Projector
doRGBProjection() - Method in class ij.plugin.ZProjector
doRGBProjections(ImagePlus) - Method in class ij.plugin.filter.Projector
doWand(int, int) - Static method in class ij.IJ: Equivalent to clicking on the current image at (x,y) with the wand tool.
doWand(int, int, double, String) - Static method in class ij.IJ: Traces the boundary of the area with pixel values within 'tolerance' of the value of the pixel at the starting location.
done - Variable in class ij.gui.StackWindow
done() - Method in class ij.macro.Interpreter
doubleBuffer - Static variable in class ij.Prefs: Double buffer display of selections.
dragEnter(DropTargetDragEvent) - Method in class ij.plugin.DragAndDrop
dragExit(DropTargetEvent) - Method in class ij.plugin.DragAndDrop
dragOver(DropTargetDragEvent) - Method in class ij.plugin.DragAndDrop
draw() - Method in class ij.ImagePlus: Draws the image.
draw(int, int, int, int) - Method in class ij.ImagePlus: Draws image and roi outline using a clip rect.
draw(Graphics) - Method in class ij.gui.Line: Draws this line on the image.
draw(Graphics) - Method in class ij.gui.OvalRoi
draw() - Method in class ij.gui.Plot: Draws the plot specified in the constructor.
draw() - Method in class ij.gui.PlotWindow: Displays the plot.
draw(Graphics) - Method in class ij.gui.PointRoi: Draws the points on the image.
draw(Graphics) - Method in class ij.gui.PolygonRoi
draw(Graphics) - Method in class ij.gui.Roi
draw(Graphics) - Method in class ij.gui.ShapeRoi: Non-destructively draws the shape of this object on the associated ImagePlus.
draw(Graphics) - Method in class ij.gui.TextRoi: Draws the text on the screen, clipped to the ROI.
draw(ImageProcessor) - Method in class ij.plugin.filter.Filler: Obsolete; replaced by ImageProcessor.draw(Roi).
draw(Roi) - Method in class ij.process.ImageProcessor: Draws an Roi.
drawColorBar(Graphics, int, int, int, int) - Method in class ij.LookUpTable
drawColorBar(ImageProcessor, int, int) - Method in class ij.plugin.filter.CalibrationBar
drawColorBar(ImagePlus, int, int) - Method in class ij.plugin.filter.CalibrationBar
drawDot(int, int) - Method in class ij.process.ImageProcessor: Draws a dot using the current line width and fill/draw value.
drawDot2(int, int) - Method in class ij.process.ImageProcessor: Obsolete
drawEllipse(ImageProcessor) - Method in class ij.process.EllipseFitter: Draws the ellipse on the specified image.
drawEllipse(ImageProcessor) - Method in class ij.process.ImageStatistics
drawHistogram(ImageProcessor, boolean) - Method in class ij.gui.HistogramWindow
drawInfo(Graphics) - Method in class ij.gui.ImageWindow: Draws the subtitle.
drawLabel(ImagePlus, ImageProcessor, int, Rectangle) - Method in class ij.plugin.filter.Filler
drawLine(double, double, double, double) - Method in class ij.gui.Plot
drawLine(int, int, int, int) - Method in class ij.process.ImageProcessor: Draws a line from (x1,y1) to (x2,y2).
drawOval(int, int, int, int) - Method in class ij.process.ImageProcessor: Draws an elliptical shape.
drawParticle(ImageProcessor, Roi, ImageStatistics, ImageProcessor) - Method in class ij.plugin.filter.ParticleAnalyzer: Draws a selected particle in a separate image.
drawPixel(int, int) - Method in class ij.process.ByteProcessor: Draws a pixel in the current foreground color.
drawPixel(int, int) - Method in class ij.process.ColorProcessor: Draws a pixel in the current foreground color.
drawPixel(int, int) - Method in class ij.process.FloatProcessor: Draws a pixel in the current foreground color.
drawPixel(int, int) - Method in class ij.process.ImageProcessor: Sets the pixel at (x,y) to the current fill/draw value.
drawPixel(int, int) - Method in class ij.process.ShortProcessor: Draws a pixel in the current foreground color.
drawPixels(ImageProcessor) - Method in class ij.gui.Line
drawPixels(ImageProcessor) - Method in class ij.gui.OvalRoi: Draws an outline of this OvalRoi on the image.
drawPixels(ImageProcessor) - Method in class ij.gui.PointRoi
drawPixels(ImageProcessor) - Method in class ij.gui.PolygonRoi
drawPixels() - Method in class ij.gui.Roi: Obsolete, use drawPixels(ImageProcessor)
drawPixels(ImageProcessor) - Method in class ij.gui.Roi: Draws the selection outline on the specified ImageProcessor.
drawPixels(ImageProcessor) - Method in class ij.gui.ShapeRoi: Draws the shape of this object onto the specified ImageProcessor.
drawPixels(ImageProcessor) - Method in class ij.gui.TextRoi: Renders the text on the image.
drawPlot(Plot) - Method in class ij.gui.PlotWindow: Draws a new plot in this window.
drawPolygon(Polygon) - Method in class ij.process.ImageProcessor: Draws a polygon.
drawRect(int, int, int, int) - Method in class ij.process.ImageProcessor: Draws a rectangle.
drawRoiBrush(Graphics) - Method in class ij.gui.ShapeRoi
drawString(String) - Method in class ij.process.ImageProcessor: Draws a string at the current location using the current fill/draw value.
drawString(String, int, int) - Method in class ij.process.ImageProcessor: Draws a string at the specified location using the current fill/draw value.
drawUnscaledColorBar(ImageProcessor, int, int, int, int) - Method in class ij.LookUpTable
drawingColor - Variable in class ij.process.ImageProcessor
drop(DropTargetDropEvent) - Method in class ij.plugin.DragAndDrop
dropActionChanged(DropTargetDragEvent) - Method in class ij.plugin.DragAndDrop
dstHeight - Variable in class ij.gui.ImageCanvas
dstWidth - Variable in class ij.gui.ImageCanvas
dumpProgram() - Method in class ij.macro.Program
dumpSymbolTable() - Method in class ij.macro.Program
duplicate(ImagePlus) - Method in class ij.plugin.filter.Duplicater
duplicate() - Method in class ij.process.ByteProcessor: Returns a duplicate of this image.
duplicate() - Method in class ij.process.ColorProcessor: Returns a duplicate of this image.
duplicate() - Method in class ij.process.FloatProcessor: Returns a duplicate of this image.
duplicate() - Method in class ij.process.ImageProcessor: Returns a duplicate of this image.
duplicate() - Method in class ij.process.ShortProcessor: Returns a duplicate of this image.
duplicateStack(ImagePlus, String) - Method in class ij.plugin.filter.Duplicater
duplicateSubstack(ImagePlus, String, int, int) - Method in class ij.plugin.filter.Duplicater

E

EDM - class ij.plugin.filter.EDM.: This plugin implements the Euclidean Distance Map (EDM), Watershed, Ultimate Eroded Points and Voronoi commands in the Process/Binary submenu.
EDM() - Constructor for class ij.plugin.filter.EDM
EIGHT_CONNECTED - Static variable in class ij.gui.Wand: Wand operation type: trace outline of 8-connected pixels
ELLIPSE - Static variable in interface ij.measure.Measurements
ELLIPSES - Static variable in class ij.plugin.filter.ParticleAnalyzer
ELSE - Static variable in interface ij.macro.MacroConstants
EMBEDDED - Static variable in class ij.ImageJ
ENDS_WITH - Static variable in interface ij.macro.MacroConstants
EOF - Static variable in interface ij.macro.MacroConstants
EQ - Static variable in interface ij.macro.MacroConstants
EVAL - Static variable in interface ij.macro.MacroConstants
EXCLUDE_EDGE_PARTICLES - Static variable in class ij.plugin.filter.ParticleAnalyzer: Do not measure particles touching edge of image.
EXEC - Static variable in interface ij.macro.MacroConstants
EXIT - Static variable in interface ij.macro.MacroConstants
EXP - Static variable in interface ij.macro.MacroConstants
EXPONENTIAL - Static variable in class ij.measure.Calibration
EXPONENTIAL - Static variable in class ij.measure.CurveFitter
EXP_RECOVERY - Static variable in class ij.measure.CurveFitter
EXP_WITH_OFFSET - Static variable in class ij.measure.CurveFitter
EXT - Static variable in interface ij.macro.MacroConstants
Editor - class ij.plugin.frame.Editor.: This is a simple TextArea based editor for editing and compiling plugins.
Editor() - Constructor for class ij.plugin.frame.Editor
Editor(int, int, int, int) - Constructor for class ij.plugin.frame.Editor
EllipseFitter - class ij.process.EllipseFitter.: This class fits an ellipse to an ROI.
EllipseFitter() - Constructor for class ij.process.EllipseFitter
Executer - class ij.Executer.: Runs ImageJ menu commands in a separate thread.
Executer(String) - Constructor for class ij.Executer: Create an Executer to run the specified menu command in this thread using the active image.
Executer(String, ImagePlus) - Constructor for class ij.Executer: Create an Executer that runs the specified menu command in a separate thread using the active image image.
ExtendedPlugInFilter - interface ij.plugin.filter.ExtendedPlugInFilter.: ImageJ plugins that process an image may implement this interface.
ExtensionDescriptor - class ij.macro.ExtensionDescriptor.
ExtensionDescriptor(String, int[], MacroExtension) - Constructor for class ij.macro.ExtensionDescriptor
east(ImageProcessor) - Method in class ij.plugin.filter.Shadows
edPaste(String) - Method in class ij.macro.FunctionFinder
enableDebugging() - Method in class ij.io.TiffDecoder
enableYesNoCancel() - Method in class ij.gui.GenericDialog: Make this a "Yes No Cancel" dialog.
enableYesNoCancel(String, String) - Method in class ij.gui.GenericDialog: Make this a "Yes No Cancel" dialog with custom labels.
endPaste() - Method in class ij.gui.Roi
equalize(ImagePlus) - Method in class ij.plugin.ContrastEnhancer
equalize(ImageProcessor) - Method in class ij.plugin.ContrastEnhancer: Changes the tone curves of images.
equals(Object) - Method in class ij.gui.Roi: Checks whether two rectangles are equal.
equals(Calibration) - Method in class ij.measure.Calibration: Compares two Calibration objects for equality.
erode() - Method in class ij.process.ByteProcessor
erode(int, int) - Method in class ij.process.ByteProcessor
erode() - Method in class ij.process.ColorProcessor
erode() - Method in class ij.process.FloatProcessor: Not implemented.
erode() - Method in class ij.process.ImageProcessor: Erodes the image or ROI using a 3x3 maximum filter.
erode() - Method in class ij.process.ShortProcessor: Not implemented.
error(String) - Static method in class ij.IJ: Displays a message in a dialog box titled "ImageJ".
error(String, String) - Static method in class ij.IJ: Displays a message in a dialog box with the specified title.
escapePressed() - Static method in class ij.IJ: Returns true if the Esc key was pressed since the last ImageJ command started to execute or since resetEscape() was called.
evalSpline(int[], int[], int, double) - Method in class ij.measure.SplineFitter: Evalutes spline function at given point
excludeEdgeParticles - Variable in class ij.plugin.filter.ParticleAnalyzer
exitConstructingMode() - Method in class ij.gui.PolygonRoi
exitWhenQuitting(boolean) - Method in class ij.ImageJ: ImageJ calls System.exit() when qutting when 'exitWhenQuitting' is true.
exp() - Method in class ij.process.FloatProcessor
exp() - Method in class ij.process.ImageProcessor: Performs a exponential transform on the image or ROI.
exp() - Method in class ij.process.ShortProcessor
expandImage(ImageProcessor, int, int, int, int) - Method in class ij.plugin.CanvasResizer
expandStack(ImageStack, int, int, int, int) - Method in class ij.plugin.CanvasResizer

F

FALSE - Static variable in interface ij.macro.MacroConstants
FAST_TRACE - Static variable in class ij.macro.Interpreter
FCOLOR - Static variable in class ij.Prefs
FERET - Static variable in interface ij.measure.Measurements
FERET - Static variable in class ij.measure.ResultsTable
FERET_ANGLE - Static variable in class ij.measure.ResultsTable
FERET_X - Static variable in class ij.measure.ResultsTable
FERET_Y - Static variable in class ij.measure.ResultsTable
FFT - class ij.plugin.FFT.: This class implements the FFT, Inverse FFT and Redisplay Power Spectrum commands in the Process/FFT submenu.
FFT() - Constructor for class ij.plugin.FFT
FFTCustomFilter - class ij.plugin.filter.FFTCustomFilter.: This class implements the Process/FFT/Custom Filter command.
FFTCustomFilter() - Constructor for class ij.plugin.filter.FFTCustomFilter
FFTFilter - class ij.plugin.filter.FFTFilter.: This class implements the Process/FFT/Bandpass Filter command.
FFTFilter() - Constructor for class ij.plugin.filter.FFTFilter
FFTMath - class ij.plugin.FFTMath.: The class implements the Process/FFT/Math command.
FFTMath() - Constructor for class ij.plugin.FFTMath
FHT - class ij.process.FHT.: This class contains a Java implementation of the Fast Hartley Transform.
FHT(ImageProcessor) - Constructor for class ij.process.FHT: Constructs a FHT object from an ImageProcessor.
FILE - Static variable in interface ij.macro.MacroConstants
FILL - Static variable in interface ij.macro.MacroConstants
FILL_BLACK - Static variable in class ij.gui.NewImage
FILL_OVAL - Static variable in interface ij.macro.MacroConstants
FILL_RAMP - Static variable in class ij.gui.NewImage
FILL_RECT - Static variable in interface ij.macro.MacroConstants
FILL_WHITE - Static variable in class ij.gui.NewImage
FILTER - Static variable in class ij.Undo
FILTERS_MENU - Static variable in class ij.Menus
FINAL_PROCESSING - Static variable in interface ij.plugin.filter.PlugInFilter: Set this flag if the setup method of the filter should be called again after the calls to the run(ip) have finished.
FIT - Static variable in interface ij.macro.MacroConstants
FITS - Static variable in class ij.io.FileInfo
FITS - Static variable in class ij.io.Opener
FITS_Reader - class ij.plugin.FITS_Reader.: Opens and displays FITS images.
FITS_Reader() - Constructor for class ij.plugin.FITS_Reader
FITS_Writer - class ij.plugin.FITS_Writer.: This plugin saves a 16 or 32 bit image in FITS format.
FITS_Writer() - Constructor for class ij.plugin.FITS_Writer
FLOAT - Static variable in class ij.plugin.filter.EDM: Output type: new 32-bit image
FLOOD_FILL - Static variable in interface ij.macro.MacroConstants
FLOOR - Static variable in interface ij.macro.MacroConstants
FOR - Static variable in interface ij.macro.MacroConstants
FOUR_CONNECTED - Static variable in class ij.gui.Wand: Wand operation type: trace outline of 4-connected pixels
FPS - Static variable in class ij.Prefs
FRAME - Static variable in class ij.measure.ResultsTable
FREELINE - Static variable in class ij.gui.Roi
FREELINE - Static variable in class ij.gui.Toolbar
FREEROI - Static variable in class ij.gui.Roi
FREEROI - Static variable in class ij.gui.Toolbar
FROM_CHAR_CODE - Static variable in interface ij.macro.MacroConstants
FUNCTION - Static variable in interface ij.macro.MacroConstants
FileInfo - class ij.io.FileInfo.: This class consists of public fields that describe an image file.
FileInfo() - Constructor for class ij.io.FileInfo: Creates a FileInfo object with all of its fields set to their default value.
FileInfoVirtualStack - class ij.plugin.FileInfoVirtualStack.: This plugin opens a multi-page TIFF file as a virtual stack.
FileInfoVirtualStack() - Constructor for class ij.plugin.FileInfoVirtualStack
FileInfoVirtualStack(FileInfo) - Constructor for class ij.plugin.FileInfoVirtualStack
FileOpener - class ij.io.FileOpener.: Opens or reverts an image specified by a FileInfo object.
FileOpener(FileInfo) - Constructor for class ij.io.FileOpener
FileSaver - class ij.io.FileSaver.: Saves images in tiff, gif, jpeg, raw, zip and text format.
FileSaver(ImagePlus) - Constructor for class ij.io.FileSaver: Constructs a FileSaver from an ImagePlus.
Filler - class ij.plugin.filter.Filler.: This plugin implements ImageJ's Fill, Clear, Clear Outside and Draw commands.
Filler() - Constructor for class ij.plugin.filter.Filler
Filters - class ij.plugin.filter.Filters.: This plugin implements the Invert, Smooth, Sharpen, Find Edges, and Add Noise commands.
Filters() - Constructor for class ij.plugin.filter.Filters
Fitter - class ij.plugin.frame.Fitter.: ImageJ plugin that does curve fitting using the modified CurveFitter class.
Fitter() - Constructor for class ij.plugin.frame.Fitter
FloatBlitter - class ij.process.FloatBlitter.: This class does bit blitting of 32-bit floating-point images.
FloatBlitter(FloatProcessor) - Constructor for class ij.process.FloatBlitter: Constructs a FloatBlitter from a FloatProcessor.
FloatPolygon - class ij.process.FloatPolygon.: Used by the Roi classes to return float coordinate arrays and to determine if a point is inside or outside of spline fitted selections.
FloatPolygon(float[], float[], int) - Constructor for class ij.process.FloatPolygon: Constructs a FloatPolygon.
FloatProcessor - class ij.process.FloatProcessor.: This is an 32-bit floating-point image and methods that operate on that image.
FloatProcessor(int, int, float[], ColorModel) - Constructor for class ij.process.FloatProcessor: Creates a new FloatProcessor using the specified pixel array and ColorModel.
FloatProcessor(int, int) - Constructor for class ij.process.FloatProcessor: Creates a blank FloatProcessor using the default grayscale LUT that displays zero as black.
FloatProcessor(int, int, int[]) - Constructor for class ij.process.FloatProcessor: Creates a FloatProcessor from an int array using the default grayscale LUT.
FloatProcessor(int, int, double[]) - Constructor for class ij.process.FloatProcessor: Creates a FloatProcessor from a double array using the default grayscale LUT.
FloatProcessor(float[][]) - Constructor for class ij.process.FloatProcessor: Creates a FloatProcessor from a 2D float array using the default LUT.
FloatProcessor(int[][]) - Constructor for class ij.process.FloatProcessor: Creates a FloatProcessor from an int[][] array.
FloatStatistics - class ij.process.FloatStatistics.: 32-bit (float) image statistics, including histogram.
FloatStatistics(ImageProcessor) - Constructor for class ij.process.FloatStatistics: Constructs an ImageStatistics object from a FloatProcessor using the standard measurement options (area, mean, mode, min and max).
FloatStatistics(ImageProcessor, int, Calibration) - Constructor for class ij.process.FloatStatistics: Constructs a FloatStatistics object from a FloatProcessor using the specified measurement options.
FloodFiller - class ij.process.FloodFiller.: This class, which does flood filling, is used by the floodFill() macro function and by the particle analyzer The Wikipedia at "http://en.wikipedia.org/wiki/Flood_fill" has a good description of the algorithm used here as well as examples in C and Java.
FloodFiller(ImageProcessor) - Constructor for class ij.process.FloodFiller
FolderOpener - class ij.plugin.FolderOpener.: Implements the File/Import/Image Sequence command, which opens a folder of images as a stack.
FolderOpener() - Constructor for class ij.plugin.FolderOpener
Fonts - class ij.plugin.frame.Fonts.: Displays a window that allows the user to set the font, size and style.
Fonts() - Constructor for class ij.plugin.frame.Fonts
FractalBoxCounter - class ij.plugin.filter.FractalBoxCounter.: Calculate the so-called "capacity" fractal dimension.
FractalBoxCounter() - Constructor for class ij.plugin.filter.FractalBoxCounter
FreehandRoi - class ij.gui.FreehandRoi.: Freehand region of interest or freehand line of interest
FreehandRoi(int, int, ImagePlus) - Constructor for class ij.gui.FreehandRoi
FunctionFinder - class ij.macro.FunctionFinder.: This class implements the text editor's Macros/Find Functions command.
FunctionFinder() - Constructor for class ij.macro.FunctionFinder
Functions - class ij.macro.Functions.: This class implements the built-in macro functions.
f(double[], double) - Method in class ij.measure.CurveFitter: Returns formula value for parameters 'p' at 'x'
f(int, double[], double) - Static method in class ij.measure.CurveFitter: Returns 'fit' formula value for parameters "p" at "x"
f2hex(float) - Static method in class ij.util.Tools: Converts a float to an 9 byte hex string starting with '#'.
fList - Static variable in class ij.measure.CurveFitter
fileFormat - Variable in class ij.io.FileInfo
fileName - Variable in class ij.io.FileInfo
fileName - Static variable in class ij.plugin.FFT
fileType - Variable in class ij.io.FileInfo
fill(ImageProcessor) - Method in class ij.plugin.filter.Filler: Obsolete; replaced by ImageProcessor.fill(Roi).
fill(ImageProcessor) - Method in class ij.process.ByteProcessor: Fills pixels that are within roi and part of the mask.
fill(ImageProcessor) - Method in class ij.process.ColorProcessor: Fills pixels that are within roi and part of the mask.
fill() - Method in class ij.process.ColorProcessor: Fills the current rectangular ROI.
fill() - Method in class ij.process.FloatProcessor: Fills the current rectangular ROI.
fill(ImageProcessor) - Method in class ij.process.FloatProcessor: Fills pixels that are within roi and part of the mask.
fill(int, int) - Method in class ij.process.FloodFiller: Does a 4-connected flood fill using the current fill/draw value, which is defined by ImageProcessor.setValue().
fill() - Method in class ij.process.ImageProcessor: Fills the image or ROI bounding rectangle with the current fill/draw value.
fill(ImageProcessor) - Method in class ij.process.ImageProcessor: Fills pixels that are within the ROI and part of the mask (i.e.
fill(Roi) - Method in class ij.process.ImageProcessor: Fills an Roi.
fill(ImageProcessor, Rectangle) - Method in class ij.process.PolygonFiller: Fills the polygon using the ImageProcessor's current drawing color.
fill() - Method in class ij.process.ShortProcessor: Fills the current rectangular ROI.
fill(ImageProcessor) - Method in class ij.process.ShortProcessor: Fills pixels that are within roi and part of the mask.
fill8(int, int) - Method in class ij.process.FloodFiller: Does a 8-connected flood fill using the current fill/draw value, which is defined by ImageProcessor.setValue().
fillOutside(Roi) - Method in class ij.process.ImageProcessor: Fills outside an Roi.
fillOval(int, int, int, int) - Method in class ij.process.ImageProcessor: Fills an elliptical shape.
fillPolygon(Polygon) - Method in class ij.process.ImageProcessor: Fills a polygon.
filter(int) - Method in class ij.process.ByteProcessor: Filters using a 3x3 neighborhood.
filter(int) - Method in class ij.process.ColorProcessor: 3x3 unweighted smoothing.
filter(int) - Method in class ij.process.FloatProcessor: Filters using a 3x3 neighborhood.
filter(int) - Method in class ij.process.ImageProcessor: A 3x3 filter operation, where the argument (BLUR_MORE, FIND_EDGES, etc.) determines the filter type.
filter(int) - Method in class ij.process.ShortProcessor: Filters using a 3x3 neighborhood.
filterRGB(int, double) - Method in class ij.process.ColorProcessor: Performs the specified filter on the red, green and blue planes of this image.
findAllMenuItems() - Method in class ij.plugin.CommandFinder
findEdges() - Method in class ij.process.ColorProcessor
findEdges() - Method in class ij.process.ImageProcessor: Finds edges in the image or ROI using a Sobel operator.
findMaxima(ImageProcessor, double, double, int, boolean, boolean) - Method in class ij.plugin.filter.MaximumFinder: Here the processing is done: Find the maxima of an image (does not find minima).
findMinAndMax() - Method in class ij.process.FloatProcessor: Calculates the minimum and maximum pixel value for the entire image.
findMinAndMax() - Method in class ij.process.ShortProcessor
findNthLowestNumber(float[], int, int) - Static method in class ij.plugin.filter.RankFilters: Find the n-th lowest number in part of an array
fit(ImageProcessor, ImageStatistics) - Method in class ij.process.EllipseFitter: Fits an ellipse to the current ROI.
fitList - Static variable in class ij.measure.CurveFitter
fitSpline(int) - Method in class ij.gui.PolygonRoi
fitSpline() - Method in class ij.gui.PolygonRoi
fitSplineForStraightening() - Method in class ij.gui.PolygonRoi
fitToWindow() - Method in class ij.gui.ImageCanvas
fixNewLines(String) - Static method in class ij.util.Tools: Converts carriage returns to line feeds.
flags - Variable in class ij.gui.ImageCanvas
flipHorizontal() - Method in class ij.process.ImageProcessor: Flips the image or ROI horizontally.
flipHorizontal() - Method in class ij.process.StackProcessor
flipStack(ImagePlus) - Method in class ij.plugin.StackReverser
flipVertical() - Method in class ij.process.ByteProcessor
flipVertical() - Method in class ij.process.ColorProcessor
flipVertical() - Method in class ij.process.FloatProcessor
flipVertical() - Method in class ij.process.ImageProcessor: Flips the image or ROI vertically.
flipVertical() - Method in class ij.process.ShortProcessor
flipVertical() - Method in class ij.process.StackProcessor
floodFill - Variable in class ij.plugin.filter.ParticleAnalyzer
flush() - Method in class ij.ImagePlus: Sets the ImageProcessor, Roi, AWT Image and stack image arrays to null.
fmImage - Variable in class ij.process.ImageProcessor
focusGained(FocusEvent) - Method in class ij.gui.GenericDialog
focusGained(FocusEvent) - Method in class ij.gui.ImageWindow
focusGained(FocusEvent) - Method in class ij.plugin.Orthogonal_Views
focusGained(FocusEvent) - Method in class ij.plugin.Scaler
focusGained(FocusEvent) - Method in class ij.plugin.frame.PlugInFrame
focusGained(FocusEvent) - Method in class ij.text.TextWindow
focusLost(FocusEvent) - Method in class ij.gui.GenericDialog
focusLost(FocusEvent) - Method in class ij.gui.ImageWindow
focusLost(FocusEvent) - Method in class ij.plugin.Orthogonal_Views
focusLost(FocusEvent) - Method in class ij.plugin.Scaler
focusLost(FocusEvent) - Method in class ij.plugin.frame.PlugInFrame
focusLost(FocusEvent) - Method in class ij.text.TextWindow
font - Variable in class ij.process.ImageProcessor
fontMetrics - Variable in class ij.process.ImageProcessor
fps - Variable in class ij.measure.Calibration: Frame rate in frames per second
frame - Variable in class ij.gui.HistogramWindow
frameInterval - Variable in class ij.io.FileInfo
frameInterval - Variable in class ij.measure.Calibration: Frame interval in 'timeUnit's
frameSelector - Variable in class ij.gui.StackWindow
freeMemory() - Static method in class ij.IJ: Runs the garbage collector and returns a string something like "64K of 256MB (25%)" that shows how much of the available memory is in use.
functionIDs - Static variable in interface ij.macro.MacroConstants
functions - Static variable in interface ij.macro.MacroConstants

G

GAMMA_VARIATE - Static variable in class ij.measure.Calibration
GAMMA_VARIATE - Static variable in class ij.measure.CurveFitter
GAUSSIAN - Static variable in class ij.measure.CurveFitter
GET_ARGUMENT - Static variable in interface ij.macro.MacroConstants
GET_BOOLEAN - Static variable in interface ij.macro.MacroConstants
GET_BOUNDING_RECT - Static variable in interface ij.macro.MacroConstants
GET_BOUNDS - Static variable in interface ij.macro.MacroConstants
GET_COORDINATES - Static variable in interface ij.macro.MacroConstants
GET_COUNT - Static variable in interface ij.macro.MacroConstants
GET_CURSOR_LOC - Static variable in interface ij.macro.MacroConstants
GET_DATE_AND_TIME - Static variable in interface ij.macro.MacroConstants
GET_DIMENSIONS - Static variable in interface ij.macro.MacroConstants
GET_DIRECTORY - Static variable in interface ij.macro.MacroConstants
GET_FILE_LIST - Static variable in interface ij.macro.MacroConstants
GET_FONT_LIST - Static variable in interface ij.macro.MacroConstants
GET_HEIGHT - Static variable in interface ij.macro.MacroConstants
GET_HISTOGRAM - Static variable in interface ij.macro.MacroConstants
GET_ID - Static variable in interface ij.macro.MacroConstants
GET_IMAGE_INFO - Static variable in interface ij.macro.MacroConstants
GET_INFO - Static variable in interface ij.macro.MacroConstants
GET_LINE - Static variable in interface ij.macro.MacroConstants
GET_LIST - Static variable in interface ij.macro.MacroConstants
GET_LOCATION_AND_SIZE - Static variable in interface ij.macro.MacroConstants
GET_LUT - Static variable in interface ij.macro.MacroConstants
GET_METADATA - Static variable in interface ij.macro.MacroConstants
GET_MIN_AND_MAX - Static variable in interface ij.macro.MacroConstants
GET_NUMBER - Static variable in interface ij.macro.MacroConstants
GET_PIXEL - Static variable in interface ij.macro.MacroConstants
GET_PIXEL_SIZE - Static variable in interface ij.macro.MacroConstants
GET_PROFILE - Static variable in interface ij.macro.MacroConstants
GET_RAW_STATISTICS - Static variable in interface ij.macro.MacroConstants
GET_RESULT - Static variable in interface ij.macro.MacroConstants
GET_RESULT_LABEL - Static variable in interface ij.macro.MacroConstants
GET_SLICE_NUMBER - Static variable in interface ij.macro.MacroConstants
GET_STATISTICS - Static variable in interface ij.macro.MacroConstants
GET_STRING - Static variable in interface ij.macro.MacroConstants
GET_STRING_WIDTH - Static variable in interface ij.macro.MacroConstants
GET_THRESHOLD - Static variable in interface ij.macro.MacroConstants
GET_TIME - Static variable in interface ij.macro.MacroConstants
GET_TITLE - Static variable in interface ij.macro.MacroConstants
GET_VALUE - Static variable in interface ij.macro.MacroConstants
GET_VERSION - Static variable in interface ij.macro.MacroConstants
GET_VOXEL_SIZE - Static variable in interface ij.macro.MacroConstants
GET_WIDTH - Static variable in interface ij.macro.MacroConstants
GET_ZOOM - Static variable in interface ij.macro.MacroConstants
GIF - Static variable in class ij.io.Opener
GIF_OR_JPG - Static variable in class ij.io.FileInfo
GRAY12_UNSIGNED - Static variable in class ij.io.FileInfo: 12-bit unsigned integer (0-4095).
GRAY16 - Static variable in class ij.ImagePlus: 16-bit grayscale (unsigned)
GRAY16 - Static variable in class ij.gui.NewImage
GRAY16_SIGNED - Static variable in class ij.io.FileInfo: 16-bit signed integer (-32768-32767).
GRAY16_UNSIGNED - Static variable in class ij.io.FileInfo: 16-bit unsigned integer (0-65535).
GRAY24_UNSIGNED - Static variable in class ij.io.FileInfo: 24-bit unsigned integer.
GRAY32 - Static variable in class ij.ImagePlus: 32-bit floating-point grayscale
GRAY32 - Static variable in class ij.gui.NewImage
GRAY32_FLOAT - Static variable in class ij.io.FileInfo: 32-bit floating-point.
GRAY32_INT - Static variable in class ij.io.FileInfo: 32-bit signed integer.
GRAY32_UNSIGNED - Static variable in class ij.io.FileInfo: 32-bit unsigned integer.
GRAY64_FLOAT - Static variable in class ij.io.FileInfo: 64-bit floating-point.
GRAY8 - Static variable in class ij.ImagePlus: 8-bit grayscale (unsigned)
GRAY8 - Static variable in class ij.gui.NewImage
GRAY8 - Static variable in class ij.io.FileInfo: 8-bit unsigned integer (0-255).
GRAYSCALE - Static variable in class ij.CompositeImage
GT - Static variable in interface ij.macro.MacroConstants
GTE - Static variable in interface ij.macro.MacroConstants
GUI - class ij.gui.GUI.: This class consists of static GUI utility methods.
GUI() - Constructor for class ij.gui.GUI
GaussianBlur - class ij.plugin.filter.GaussianBlur.: This plug-in filter uses convolution with a Gaussian function for smoothing.
GaussianBlur() - Constructor for class ij.plugin.filter.GaussianBlur: Default constructor
GelAnalyzer - class ij.plugin.GelAnalyzer.: This plugin generates gel profile plots that can be analyzed using the wand tool.
GelAnalyzer() - Constructor for class ij.plugin.GelAnalyzer
GenericDialog - class ij.gui.GenericDialog.: This class is a customizable modal dialog box.
GenericDialog(String) - Constructor for class ij.gui.GenericDialog: Creates a new GenericDialog with the specified title.
GenericDialog(String, Frame) - Constructor for class ij.gui.GenericDialog: Creates a new GenericDialog using the specified title and parent frame.
GifWriter - class ij.plugin.GifWriter.: Writes a stack as an animated Gif
GifWriter() - Constructor for class ij.plugin.GifWriter
gLUT1 - Variable in class ij.process.ImageProcessor
gLUT2 - Variable in class ij.process.ImageProcessor
gamma(double) - Method in class ij.process.FloatProcessor
gamma(double) - Method in class ij.process.ImageProcessor: Performs gamma correction of the image or ROI.
gamma(double) - Method in class ij.process.ShortProcessor
gapBetweenImages - Variable in class ij.io.FileInfo
get(String, String) - Static method in class ij.Prefs: Uses the keyword key to retrieve a string from the preferences file.
get(String, double) - Static method in class ij.Prefs: Uses the keyword key to retrieve a number from the preferences file.
get(String, boolean) - Static method in class ij.Prefs: Uses the keyword key to retrieve a boolean from the preferences file.
get(int, int) - Method in class ij.process.ByteProcessor
get(int) - Method in class ij.process.ByteProcessor
get(int, int) - Method in class ij.process.ColorProcessor
get(int) - Method in class ij.process.ColorProcessor
get(int, int) - Method in class ij.process.FloatProcessor
get(int) - Method in class ij.process.FloatProcessor
get(int, int) - Method in class ij.process.ImageProcessor: This is a faster version of getPixel() that does not do bounds checking.
get(int) - Method in class ij.process.ImageProcessor
get(int, int) - Method in class ij.process.ShortProcessor
get(int) - Method in class ij.process.ShortProcessor
get16BitBufferedImage() - Method in class ij.process.ShortProcessor: Returns a copy of this image as a TYPE_USHORT_GRAY BufferedImage.
getActiveChannels() - Method in class ij.CompositeImage
getAdditionalFunctions() - Static method in class ij.macro.Interpreter
getAngle() - Method in class ij.gui.PolygonRoi: Returns the angle in degrees between the first two segments of this polyline.
getAngle(int, int, int, int) - Method in class ij.gui.Roi: Returns the angle in degrees between the specified line and a horizontal line.
getApplet() - Static method in class ij.IJ: Returns the Applet that created this ImageJ or null if running as an application.
getArgs() - Static method in class ij.ImageJ: Returns the command line arguments passed to ImageJ.
getAutoThreshold() - Method in class ij.process.ImageProcessor: Returns a pixel value (threshold) that can be used to divide the image into objects and background.
getAutoThreshold(int[]) - Method in class ij.process.ImageProcessor: This is a version of getAutoThreshold() that uses a histogram passed as an argument.
getBackgroundColor() - Static method in class ij.gui.Toolbar
getBackgroundValue() - Method in class ij.process.ByteProcessor: Returns the background fill value.
getBackgroundValue() - Method in class ij.process.ColorProcessor: Returns the background fill value.
getBackgroundValue() - Method in class ij.process.FloatProcessor: Always returns 0.
getBackgroundValue() - Method in class ij.process.ImageProcessor: Returns the background fill value.
getBackgroundValue() - Method in class ij.process.ShortProcessor: Always returns 0.
getBatchModeImage(int) - Static method in class ij.macro.Interpreter
getBatchModeImageCount() - Static method in class ij.macro.Interpreter
getBatchModeImageIDs() - Static method in class ij.macro.Interpreter
getBatchModeRoiManager() - Static method in class ij.macro.Interpreter: Returns the batch mode RoiManager instance.
getBestIndex(Color) - Method in class ij.process.ColorProcessor: Always returns 0 since RGB images do not use LUTs.
getBestIndex(Color) - Method in class ij.process.ImageProcessor: Returns the LUT index that's the best match for this color.
getBicubicInterpolatedPixel(double, double, ImageProcessor) - Method in class ij.process.FloatProcessor: This method is from Chapter 16 of "Digital Image Processing: An Algorithmic Introduction Using Java" by Burger and Burge (http://www.imagingbook.com/).
getBicubicInterpolatedPixel(double, double, ImageProcessor) - Method in class ij.process.ImageProcessor: This method is from Chapter 16 of "Digital Image Processing: An Algorithmic Introduction Using Java" by Burger and Burge (http://www.imagingbook.com/).
getBitDepth() - Method in class ij.ImagePlus: Returns the bit depth, 8, 16, 24 (RGB) or 32.
getBitDepth() - Method in class ij.VirtualStack: Returns the bit depth (8, 16, 24 or 32), or 0 if the bit depth is not known.
getBits(int) - Method in class ij.io.BitBuffer
getBlues() - Method in class ij.LookUpTable
getBoolean(String, boolean) - Static method in class ij.Prefs: Finds a boolean in IJ_Props or IJ_Prefs.txt.
getBoundingRect() - Method in class ij.gui.Roi: This obsolete method has been replaced by getBounds().
getBounds() - Method in class ij.gui.Line: Return the bounding rectangle of this line.
getBounds() - Method in class ij.gui.Roi: Return this selection's bounding rectangle.
getBrightness() - Method in class ij.process.ColorProcessor: Returns brightness as a FloatProcessor.
getBrushSize() - Static method in class ij.gui.Toolbar: Returns the size of the brush tool or 0 if the brush tool is not enabled.
getBufferedImage() - Method in class ij.ImagePlus: Returns this image as a BufferedImage.
getBufferedImage() - Method in class ij.process.ByteProcessor: Returns this image as a BufferedImage.
getBufferedImage() - Method in class ij.process.FloatProcessor: Returns this image as an 8-bit BufferedImage.
getBufferedImage() - Method in class ij.process.ImageProcessor: Returns this image as a BufferedImage.
getBufferedImage() - Method in class ij.process.ShortProcessor: Returns this image as an 8-bit BufferedImage .
getButtonSize() - Static method in class ij.gui.Toolbar
getButtons() - Method in class ij.gui.GenericDialog: Returns references to the "OK" ("Yes"), "Cancel", and if present, "No" buttons as an array.
getByteRow(ImageStack, int, int, int, int, int, int[]) - Method in class ij.plugin.filter.Projector
getBytes() - Method in class ij.process.LUT
getBytesPerPixel() - Method in class ij.ImagePlus: Returns the number of bytes per pixel.
getBytesPerPixel() - Method in class ij.io.FileInfo: Returns the number of bytes used per pixel.
getCTable() - Method in class ij.measure.Calibration: Returns the calibration table.
getCValue(int) - Method in class ij.measure.Calibration: Converts a raw pixel value to a density calibrated value.
getCValue(double) - Method in class ij.measure.Calibration: Converts a raw pixel value to a density calibrated value.
getCalibration() - Method in class ij.ImagePlus: Returns this image's calibration.
getCalibrationTable() - Method in class ij.process.ImageProcessor: Returns the calibration table or null.
getCanvas() - Method in class ij.ImagePlus: Returns the ImageCanvas being used to display this image, or null.
getCanvas() - Method in class ij.gui.ImageWindow
getChannel() - Method in class ij.ImagePlus
getChannelColor() - Method in class ij.CompositeImage
getChannelLut(int) - Method in class ij.CompositeImage
getChannelLut() - Method in class ij.CompositeImage
getChannelProcessor() - Method in class ij.CompositeImage
getChannelProcessor() - Method in class ij.ImagePlus: Returns a reference to the current ImageProcessor.
getCheckboxes() - Method in class ij.gui.GenericDialog: Returns the Vector containing the Checkboxes.
getChoices() - Method in class ij.gui.GenericDialog: Returns the Vector containing the Choices.
getClassLoader() - Static method in class ij.IJ: Returns an instance of the class loader ImageJ uses to run plugins.
getClipboard() - Static method in class ij.ImagePlus: Returns the internal clipboard or null if the internal clipboard is empty.
getCode() - Method in class ij.macro.Program
getCoefficients() - Method in class ij.measure.Calibration: Returns the calibration function coefficients.
getColor(String, Color) - Static method in class ij.Prefs: Finds a color in IJ_Props or IJ_Prefs.txt.
getColor() - Method in class ij.gui.ColorChooser: Displays a color selection dialog and returns the color selected by the user.
getColor() - Static method in class ij.gui.Roi: Returns the color used for drawing ROI outlines.
getColor() - Method in class ij.gui.Toolbar: Obsolete.
getColor(String, Color) - Static method in class ij.plugin.Colors
getColor(int, int) - Method in class ij.process.ColorProcessor
getColorModel() - Method in class ij.ImageStack: Returns this stack's color model.
getColorModel() - Method in class ij.LookUpTable
getColorModel() - Method in class ij.process.ImageProcessor: Returns this processor's color model.
getColorName(Color, String) - Static method in class ij.plugin.Colors
getColumn(int) - Method in class ij.measure.ResultsTable: Returns a copy of the given column as a float array, or null if the column is empty.
getColumn(int, int, int[], int) - Method in class ij.process.ImageProcessor: Returns the pixel values down the column starting at (x,y).
getColumnAsDoubles(int) - Method in class ij.measure.ResultsTable: Returns a copy of the given column as a double array, or null if the column is empty.
getColumnHeading(int) - Method in class ij.measure.ResultsTable: Returns the heading of the specified column or null if the column is empty.
getColumnHeadings() - Method in class ij.measure.ResultsTable: Returns a tab-delimited string containing the column headings.
getColumnHeadings() - Method in class ij.text.TextPanel: Returns the column headings as a tab-delimited string.
getColumnIndex(String) - Method in class ij.measure.ResultsTable: Returns the index of the first column with the given heading.
getCommand() - Static method in class ij.Executer: Returns the last command executed.
getCommand() - Static method in class ij.plugin.frame.Recorder: Returns the name of the command currently being recorded, or null.
getCommandOptions() - Static method in class ij.plugin.frame.Recorder: Used by GenericDialog to determine if any options have been recorded.
getCommands() - Static method in class ij.Menus: Returns the hashtable that associates commands with plugins.
getComplexTransform() - Method in class ij.process.FHT: Converts this FHT to a complex Fourier transform and returns it as a two slice stack.
getConvexHull() - Method in class ij.gui.PolygonRoi: Uses the gift wrap algorithm to find the convex hull and returns it as a Polygon.
getConvexHull() - Method in class ij.gui.Roi
getConvexHull() - Method in class ij.gui.ShapeRoi: Always returns null.
getCopy() - Method in class ij.process.FHT: Returns a clone of this FHT.
getCount() - Method in class ij.plugin.frame.RoiManager: Returns the ROI count.
getCounter() - Method in class ij.measure.ResultsTable: Returns the current value of the measurement counter.
getCounter() - Static method in class ij.plugin.filter.Analyzer: Returns the current measurement count.
getCurrentColorModel() - Method in class ij.process.ImageProcessor: Returns the current color model, which may have been modified by setMinAndMax() or setThreshold().
getCurrentImage() - Static method in class ij.WindowManager: Returns a reference to the active image or null if there isn't one.
getCurrentPasteMode() - Static method in class ij.gui.Roi: Returns the current paste transfer mode.
getCurrentSlice() - Method in class ij.ImagePlus: Returns the current stack slice number or 1 if this is a single image.
getCurrentWindow() - Static method in class ij.WindowManager: Returns the active ImageWindow.
getCursorLoc() - Method in class ij.gui.ImageCanvas: Returns the current cursor location in image coordinates.
getDecimalPlaces(double, double) - Static method in class ij.util.Tools: Returns the number of decimal places need to display two numbers.
getDefaultColorModel() - Method in class ij.process.ImageProcessor: Returns the default grayscale IndexColorModel.
getDefaultDirectory() - Static method in class ij.Prefs: Returns the default directory, if any, or null.
getDefaultDirectory() - Static method in class ij.io.OpenDialog: Returns the current working directory, which may be null.
getDescriptionString() - Method in class ij.io.FileSaver: Returns a string containing information about the specified image.
getDimensions() - Method in class ij.ImagePlus: Returns the dimensions of this image (width, height, nChannels, nSlices, nFrames) as a 5 element int array.
getDir(String) - Static method in class ij.Macro
getDir(String) - Method in class ij.io.Opener
getDirectory(String) - Static method in class ij.IJ: Returns the path to the home ("user.home"), startup, ImageJ, plugins, macros, luts, temp, current or image directory if title is "home", "startup", "imagej", "plugins", "macros", "luts", "temp", "current" or "image", otherwise, displays a dialog and returns the path to the directory selected by the user.
getDirectory() - Method in class ij.VirtualStack: Returns the path to the directory containing the images.
getDirectory() - Method in class ij.io.DirectoryChooser: Returns the directory selected by the user.
getDirectory() - Method in class ij.io.OpenDialog: Returns the selected directory.
getDirectory() - Method in class ij.io.SaveDialog: Returns the selected directory.
getDirectory() - Method in class ij.macro.Functions
getDisplayList() - Method in class ij.gui.ImageCanvas: Returns the current display list, or null if there is no display list.
getDisplayRangeMax() - Method in class ij.CompositeImage
getDisplayRangeMax() - Method in class ij.ImagePlus
getDisplayRangeMin() - Method in class ij.CompositeImage
getDisplayRangeMin() - Method in class ij.ImagePlus
getDoScaling() - Static method in class ij.process.ImageConverter: Returns true if scaling is enabled.
getDouble(String, double) - Static method in class ij.Prefs: Looks up a real number in IJ_Props or IJ_Prefs.txt.
getDrawLabels() - Method in class ij.plugin.frame.RoiManager
getEditor() - Method in class ij.macro.Interpreter
getEditor() - Method in class ij.plugin.NewPlugin: Returns the Editor the newly created macro or plugin was opened in.
getErrorMessage() - Method in class ij.gui.GenericDialog: Returns an error message if getNextNumber was unable to convert a string into a number, otherwise, returns null.
getExtensionFunctions() - Method in interface ij.macro.MacroExtension
getFeretValues() - Method in class ij.gui.Roi: Caculates "Feret" (maximum caliper width), "FeretAngle" and "MinFeret" (minimum caliper width), "FeretX" and "FeretY".
getFeretValues() - Method in class ij.gui.ShapeRoi: Caculates "Feret" (maximum caliper width) and "MinFeret" (minimum caliper width).
getFeretsDiameter() - Method in class ij.gui.Roi: Returns Feret's diameter, the greatest distance between any two points along the ROI boundary.
getFileInfo() - Method in class ij.ImagePlus: Returns a FileInfo object containing information, including the pixel array, needed to save this image.
getFileInfo() - Method in class ij.io.ImportDialog: Displays the dialog and returns a FileInfo object that can be used to open the image.
getFileName(int) - Method in class ij.VirtualStack: Returns the file name of the specified slice, were 1<=n<=nslices.
getFileName() - Method in class ij.io.OpenDialog: Returns the selected file name.
getFileName() - Method in class ij.io.SaveDialog: Returns the selected file name.
getFileName() - Static method in class ij.plugin.MacroInstaller
getFilePointer() - Method in class ij.io.RandomAccessStream
getFileSeparator() - Static method in class ij.Prefs: Returns the file.separator system property.
getFileType(String) - Method in class ij.io.Opener: Attempts to determine the image file type by looking for 'magic numbers' and the file name extension.
getFit() - Method in class ij.measure.CurveFitter
getFitGoodness() - Method in class ij.measure.CurveFitter: Get a measure of "goodness of fit" where 1.0 is best.
getFixedMax() - Static method in class ij.gui.ProfilePlot: Returns the profile plot y-axis max.
getFixedMin() - Static method in class ij.gui.ProfilePlot: Returns the profile plot y-axis min.
getFloatArray() - Method in class ij.process.ImageProcessor: Returns a copy of the pixel data as a 2D float array with dimensions [x=0..width-1][y=0..height-1].
getFloatPolygon() - Method in class ij.gui.PolygonRoi: Returns this polygon or polyline as float arrays.
getFloatPolygon() - Method in class ij.gui.Roi
getFont() - Static method in class ij.Menus
getFont() - Static method in class ij.gui.TextRoi: Returns the name of the current font.
getFont() - Method in class ij.process.ImageProcessor: Returns the current font.
getFontMetrics() - Method in class ij.process.ImageProcessor: Returns the current FontMetrics.
getFontSize() - Static method in class ij.Menus: Returns the size (in points) used for the fonts in ImageJ menus.
getForegroundColor() - Static method in class ij.gui.Toolbar
getFormula() - Method in class ij.measure.CurveFitter
getFrame() - Method in class ij.ImagePlus
getFrame(String) - Static method in class ij.WindowManager: Returns the frame with the specified title or null if a frame with that title is not found.
getFrameRate() - Static method in class ij.plugin.Animator: Returns the current animation speed in frames per second.
getFreeColumn(String) - Method in class ij.measure.ResultsTable: Sets the heading of the the first available column and returns that column's index.
getFrontWindow() - Static method in class ij.WindowManager: Returns the front most window or null.
getFunction() - Method in class ij.measure.Calibration: Returns the calibration function ID.
getGlobalCalibration() - Method in class ij.ImagePlus: Returns the system-wide calibration, or null.
getGlobals() - Method in class ij.macro.Program
getGreens() - Method in class ij.LookUpTable
getHSB(byte[], byte[], byte[]) - Method in class ij.process.ColorProcessor: Returns hue, saturation and brightness in 3 byte arrays.
getHSBStack() - Method in class ij.process.ColorProcessor: Returns an ImageStack with three 8-bit slices, representing hue, saturation and brightness
getHeader(ImagePlus) - Static method in class ij.plugin.FITS_Writer: Extracts the original FITS header from the Properties object of the ImagePlus image (or from the current slice label in the case of an ImageStack) and returns it as an array of String objects representing each card.
getHeight() - Method in class ij.ImagePlus
getHeight() - Method in class ij.ImageStack
getHeight() - Method in class ij.plugin.AVI_Reader: Returns the image height of the virtual stack
getHeight() - Method in class ij.plugin.FileInfoVirtualStack
getHeight() - Method in class ij.plugin.ListVirtualStack
getHeight() - Method in class ij.process.ImageProcessor: Returns the height of this image in pixels.
getHigherZoomLevel(double) - Static method in class ij.gui.ImageCanvas
getHistogram() - Method in class ij.gui.HistogramWindow
getHistogram() - Method in class ij.process.ByteProcessor
getHistogram(ImageProcessor) - Method in class ij.process.ByteProcessor
getHistogram() - Method in class ij.process.ColorProcessor
getHistogram(ImageProcessor) - Method in class ij.process.ColorProcessor
getHistogram() - Method in class ij.process.FloatProcessor: Not implemented.
getHistogram() - Method in class ij.process.ImageProcessor: Returns the histogram of the image or ROI.
getHistogram() - Method in class ij.process.ShortProcessor: Returns 65536 bin histogram of the current ROI, which can be non-rectangular.
getHistogramMax() - Method in class ij.process.ImageProcessor: Returns the maximum histogram value used for histograms of float images.
getHistogramMin() - Method in class ij.process.ImageProcessor: Returns the minimum histogram value used for histograms of float images.
getHistogramSize() - Method in class ij.process.ImageProcessor: Returns the number of float image histogram bins.
getHomeDir() - Static method in class ij.Prefs: Returns the path to the ImageJ directory.
getID() - Method in class ij.ImagePlus: Returns this image's unique numeric ID.
getIDList() - Static method in class ij.WindowManager: Returns a list of the IDs of open images.
getImage() - Method in class ij.CompositeImage
getImage() - Static method in class ij.IJ: Returns a reference to the active image.
getImage() - Method in class ij.ImagePlus: Returns this image as a AWT image.
getImage(int) - Static method in class ij.WindowManager: For IDs less than zero, returns the ImagePlus with the specified ID.
getImage(String) - Static method in class ij.WindowManager: Returns the first image that has the specified title or null if it is not found.
getImage() - Static method in class ij.plugin.Orthogonal_Views
getImageArray() - Method in class ij.ImageStack: Returns the stack as an array of 1D pixel arrays.
getImageArray() - Method in class ij.VirtualStack: Returns null.
getImageCount() - Static method in class ij.WindowManager: Returns the number of open images.
getImageInfo(ImagePlus, ImageProcessor) - Method in class ij.plugin.filter.Info
getImagePlus() - Method in class ij.gui.ImageWindow
getImagePlus() - Method in class ij.gui.Plot: Returns the plot as an ImagePlus.
getImagePlus() - Method in class ij.plugin.AVI_Reader: Returns the ImagePlus opened by run().
getImageStack() - Method in class ij.ImagePlus: Returns the base image stack.
getImageStackSize() - Method in class ij.ImagePlus: If this is a stack, returns the actual number of images in the stack, else returns 1.
getImagesURL() - Static method in class ij.Prefs: Returns the URL of the directory that contains the ImageJ sample images.
getIndexSampleModel() - Method in class ij.process.ImageProcessor
getInitialMagnification() - Method in class ij.gui.ImageWindow
getInsets() - Method in class ij.gui.GenericDialog
getInsets() - Method in class ij.gui.ImageWindow: Override Container getInsets() to make room for some text above the image.
getInstance() - Static method in class ij.IJ: Returns a reference to the "ImageJ" frame.
getInstance() - Static method in class ij.gui.Toolbar: Returns a reference to the ImageJ toolbar.
getInstance() - Static method in class ij.macro.Interpreter
getInstance() - Static method in class ij.plugin.frame.Channels
getInstance() - Static method in class ij.plugin.frame.Editor
getInstance() - Static method in class ij.plugin.frame.RoiManager: Returns a reference to the ROI Manager or null if it is not open.
getInstanceColor() - Method in class ij.gui.Roi: Returns the the color used to draw the ROI outline or null if the default color is being used.
getInt(String, int) - Static method in class ij.Prefs: Finds an int in IJ_Props or IJ_Prefs.txt.
getIntArray() - Method in class ij.process.ImageProcessor: Returns a copy of the pixel data as a 2D int array with dimensions [x=0..width-1][y=0..height-1].
getInterpolate() - Method in class ij.process.ImageProcessor: Returns the value of the interpolate field.
getInterpolatedPixel(double, double) - Method in class ij.process.ByteProcessor: Uses the current interpolation method (BILINEAR or BICUBIC) to calculate the pixel value at real coordinates (x,y).
getInterpolatedPixel(double, double) - Method in class ij.process.ColorProcessor: Calls getPixelValue(x,y).
getInterpolatedPixel(double, double) - Method in class ij.process.FloatProcessor: Uses the current interpolation method (BILINEAR or BICUBIC) to calculate the pixel value at real coordinates (x,y).
getInterpolatedPixel(double, double) - Method in class ij.process.ImageProcessor: Uses the current interpolation method (bilinear or bicubic) to find the pixel value at real coordinates (x,y).
getInterpolatedPixel(double, double) - Method in class ij.process.ShortProcessor: Uses the current interpolation method (BILINEAR or BICUBIC) to calculate the pixel value at real coordinates (x,y).
getInterpolatedRGBPixel(double, double) - Method in class ij.process.ColorProcessor: Uses bilinear interpolation to find the pixel value at real coordinates (x,y).
getInterpolatedValue(double, double) - Method in class ij.process.ImageProcessor: Uses bilinear interpolation to find the pixel value at real coordinates (x,y).
getInterpolationMethods() - Static method in class ij.process.ImageProcessor
getIterations() - Method in class ij.measure.CurveFitter: Get number of iterations performed
getJSPrefix(String) - Static method in class ij.plugin.frame.Editor
getJpegQuality() - Static method in class ij.io.FileSaver: Returns the current JPEG quality setting (0-100).
getLabel(int) - Method in class ij.measure.ResultsTable: Returns the label of the specified row.
getLastBatchModeImage() - Static method in class ij.macro.Interpreter
getLastColumn() - Method in class ij.measure.ResultsTable: Returns the index of the last used column, or -1 if no columns are used.
getLastDirectory() - Static method in class ij.io.OpenDialog: Returns the path to the last directory opened by the user using a file open or file save dialog, or using drag and drop.
getLastFileInfo() - Static method in class ij.io.ImportDialog: Returns the FileInfo object used to import the last raw image, or null if a raw image has not been imported.
getLastName() - Static method in class ij.io.OpenDialog: Returns the name of the last file opened by the user using a file open or file save dialog, or using drag and drop.
getLength() - Method in class ij.gui.Line: Returns the length of this line.
getLength() - Method in class ij.gui.OvalRoi: Returns the perimeter length.
getLength() - Method in class ij.gui.PolygonRoi: Returns the perimeter (for ROIs) or length (for lines).
getLength() - Method in class ij.gui.Roi: Returns the perimeter length.
getLength() - Method in class ij.gui.ShapeRoi: Returns the length of this shape (perimeter, if shape is closed).
getLine(double, double, double, double) - Method in class ij.process.ImageProcessor: Returns an array containing the pixel values along the line starting at (x1,y1) and ending at (x2,y2).
getLine(int) - Method in class ij.text.TextPanel: Returns the specified line as a string.
getLineCount() - Method in class ij.text.TextPanel: Returns the number of lines of text in this TextPanel.
getLineNumber() - Method in class ij.macro.Interpreter
getLineWidth() - Method in class ij.gui.Roi: Returns the lineWidth.
getLineWidth() - Method in class ij.process.ImageProcessor: Returns the current line width.
getList() - Method in class ij.plugin.frame.RoiManager: Returns the selection list.
getLocalCalibration() - Method in class ij.ImagePlus: Returns this image's local calibration, ignoring the "Global" calibration flag.
getLocation(String) - Static method in class ij.Prefs: Uses the keyword key to retrieve a location from the preferences file.
getLocationAsString(int, int) - Method in class ij.ImagePlus: Converts the current cursor location to a string.
getLongFilePointer() - Method in class ij.io.RandomAccessStream
getLowerZoomLevel(double) - Static method in class ij.gui.ImageCanvas
getLutUpdateMode() - Method in class ij.process.ImageProcessor: Returns the LUT update mode, which can be RED_LUT, BLACK_AND_WHITE_LUT, OVER_UNDER_LUT or NO_LUT_UPDATE.
getLuts() - Method in class ij.CompositeImage
getLuts() - Method in class ij.ImagePlus
getMacroCode(ImageProcessor) - Method in class ij.gui.TextRoi
getMacroCount() - Method in class ij.Menus
getMacroCount() - Method in class ij.plugin.MacroInstaller
getMacroShortcuts() - Static method in class ij.Menus: Returns the hashtable that associates keyboard shortcuts with macros.
getMacrosMenu() - Static method in class ij.Menus
getMacrosPath() - Static method in class ij.Menus: Returns the path to the macros directory or null if the macros directory was not found.
getMagnification() - Method in class ij.gui.ImageCanvas
getMapSize() - Method in class ij.LookUpTable
getMask() - Method in class ij.ImagePlus: For images with irregular ROIs, returns a byte mask, otherwise, returns null.
getMask() - Method in class ij.gui.OvalRoi
getMask() - Method in class ij.gui.PointRoi
getMask() - Method in class ij.gui.PolygonRoi: Override Roi.nudge() to support splines.
getMask() - Method in class ij.gui.Roi: Always returns null for rectangular Roi's
getMask() - Method in class ij.gui.ShapeRoi: Returns this ROI's mask pixels as a ByteProcessor with pixels "in" the mask set to white (255) and pixels "outside" the mask set to black (0).
getMask() - Method in class ij.process.ImageProcessor: For images with irregular ROIs, returns a mask, otherwise, returns null.
getMask(int, int) - Method in class ij.process.PolygonFiller: Returns a byte mask containing a filled version of the polygon.
getMaskArray() - Method in class ij.process.ImageProcessor: Returns the mask byte array, or null if there is no mask.
getMax() - Method in class ij.gui.ProfilePlot: Returns the calculated maximum value.
getMax(double[]) - Static method in class ij.measure.CurveFitter: Gets index of highest value in an array.
getMax() - Method in class ij.process.ByteProcessor: Returns the largest displayed pixel value.
getMax() - Method in class ij.process.ColorProcessor: Returns the largest displayed pixel value.
getMax() - Method in class ij.process.FloatProcessor: Returns the largest displayed pixel value.
getMax() - Method in class ij.process.ImageProcessor: Returns the largest displayed pixel value.
getMax() - Method in class ij.process.ShortProcessor: Returns the largest displayed pixel value.
getMaxIterations() - Method in class ij.measure.CurveFitter: Get maximum number of iterations allowed
getMaxThreshold() - Method in class ij.process.ImageProcessor: Returns the upper threshold level.
getMaximumBounds() - Method in class ij.gui.ImageWindow
getMeasurements() - Static method in class ij.plugin.filter.Analyzer
getMemorySetting() - Method in class ij.plugin.Memory
getMenuBar() - Static method in class ij.Menus
getMenus() - Method in class ij.macro.Program
getMessage() - Method in class ij.gui.GenericDialog: Returns a reference to the Label or MultiLineLabel created by the last addMessage() call, or null if addMessage() was not called.
getMethods() - Static method in class ij.process.AutoThresholder
getMin() - Method in class ij.gui.ProfilePlot: Returns the calculated minimum value.
getMin() - Method in class ij.process.ByteProcessor: Returns the smallest displayed pixel value.
getMin() - Method in class ij.process.ColorProcessor: Returns the smallest displayed pixel value.
getMin() - Method in class ij.process.FloatProcessor: Returns the smallest displayed pixel value.
getMin() - Method in class ij.process.ImageProcessor: Returns the smallest displayed pixel value.
getMin() - Method in class ij.process.ShortProcessor: Returns the smallest displayed pixel value.
getMinMax(double[]) - Static method in class ij.util.Tools
getMinMax(float[]) - Static method in class ij.util.Tools
getMinThreshold() - Method in class ij.process.ImageProcessor: Returns the lower threshold level.
getMinimumSize() - Method in class ij.gui.MultiLineLabel
getMinimumSize() - Method in class ij.gui.Toolbar
getMinimumSize() - Method in class ij.gui.TrimmedButton
getMode() - Method in class ij.CompositeImage
getMode() - Static method in class ij.plugin.WandToolOptions
getModeAsString() - Method in class ij.CompositeImage
getModifiers() - Method in class ij.gui.ImageCanvas: Returns the mouse event modifiers.
getNChannels() - Method in class ij.ImagePlus: Returns the number of channels.
getNChannels() - Method in class ij.process.ColorProcessor: Returns the number of color channels of the image, i.e., 3.
getNChannels() - Method in class ij.process.ImageProcessor: Returns the number of color channels in the image.
getNCoordinates() - Method in class ij.gui.PolygonRoi: Returns the number of XY coordinates.
getNDimensions() - Method in class ij.ImagePlus: Returns the number of dimensions (2, 3, 4 or 5).
getNFrames() - Method in class ij.ImagePlus: Returns the number of frames (time-points).
getNSlices() - Method in class ij.ImagePlus: Returns the image depth (number of z-slices).
getName(String) - Static method in class ij.Macro
getName() - Method in class ij.gui.Roi: Returns the name of this ROI, or null.
getName(String) - Method in class ij.io.Opener
getName() - Method in class ij.measure.CurveFitter
getName() - Method in class ij.plugin.TextReader: Returns the file name.
getName(String) - Static method in class ij.plugin.frame.RoiManager: Returns the name of the selection with the specified index.
getNextBoolean() - Method in class ij.gui.GenericDialog: Returns the state of the next checkbox.
getNextChoice() - Method in class ij.gui.GenericDialog: Returns the selected item in the next popup menu.
getNextChoiceIndex() - Method in class ij.gui.GenericDialog: Returns the index of the selected item in the next popup menu.
getNextNumber() - Method in class ij.gui.GenericDialog: Returns the contents of the next numeric field.
getNextString() - Method in class ij.gui.GenericDialog: Returns the contents of the next text field.
getNextText() - Method in class ij.gui.GenericDialog: Returns the contents of the next textarea.
getNonImageWindows() - Static method in class ij.WindowManager: Returns an array containing a list of the non-image windows.
getNonSplineCoordinates() - Method in class ij.gui.PolygonRoi
getNthImageID(int) - Static method in class ij.WindowManager: Returns the ID of the Nth open image.
getNumParams() - Method in class ij.measure.CurveFitter: Get number of parameters for current fit formula
getNumber(String, double) - Static method in class ij.IJ: Allows the user to enter a number in a dialog box.
getNumericFields() - Method in class ij.gui.GenericDialog: Returns the Vector containing the numeric TextFields.
getOffset() - Method in class ij.io.FileInfo: Returns the offset as a long.
getOpenAsHyperStack() - Method in class ij.ImagePlus
getOpenUsingPlugins() - Static method in class ij.io.Opener: Returns the state of the openUsingPlugins flag.
getOptions() - Static method in class ij.Macro: If a command started using run(name, options) is running, and the current thread is the same thread, returns the options string, otherwise, returns null.
getOriginalFileInfo() - Method in class ij.ImagePlus: Returns the FileInfo object that was used to open this image.
getOutputImage() - Method in class ij.plugin.filter.ParticleAnalyzer: Returns the "Outlines", "Masks", "Elipses" or "Count Masks" image, or null if "Nothing" is selected in the "Show:" menu.
getOutputType() - Static method in class ij.plugin.filter.EDM: Returns the current output type (BYTE_OVERWRITE, BYTE, SHORT or FLOAT)
getParams() - Method in class ij.measure.CurveFitter: Get the set of parameter values from the best corner of the simplex
getPasteMode() - Method in class ij.gui.Roi: Returns the current paste transfer mode, or NOT_PASTING (-1) if no paste operation is in progress.
getPixel(int, int) - Method in class ij.ImagePlus: Returns the pixel value at (x,y) as a 4 element array.
getPixel(int, int) - Method in class ij.process.ByteProcessor
getPixel(int, int) - Method in class ij.process.ColorProcessor
getPixel(int, int, int[]) - Method in class ij.process.ColorProcessor: Returns the 3 samples for the pixel at (x,y) in an array of int.
getPixel(int, int) - Method in class ij.process.FloatProcessor: Returns a pixel value that must be converted using Float.intBitsToFloat().
getPixel(int, int, int[]) - Method in class ij.process.FloatProcessor: Returns the value of the pixel at (x,y) in a one element int array.
getPixel(int, int) - Method in class ij.process.ImageProcessor: Returns the value of the pixel at (x,y).
getPixel(int, int, int[]) - Method in class ij.process.ImageProcessor: Returns the samples for the pixel at (x,y) in an int array.
getPixel(int, int) - Method in class ij.process.ShortProcessor
getPixelCount() - Method in class ij.process.ImageProcessor
getPixelInterpolated(double, double) - Method in class ij.process.ByteProcessor
getPixelInterpolated(double, double) - Method in class ij.process.ColorProcessor
getPixelInterpolated(double, double) - Method in class ij.process.FloatProcessor
getPixelInterpolated(double, double) - Method in class ij.process.ImageProcessor: Uses the current interpolation method to find the pixel value at real coordinates (x,y).
getPixelInterpolated(double, double) - Method in class ij.process.ShortProcessor
getPixelValue(int, int) - Method in class ij.process.ByteProcessor
getPixelValue(int, int) - Method in class ij.process.ColorProcessor: Converts the specified pixel to grayscale using the formula g=(r+g+b)/3 and returns it as a float.
getPixelValue(int, int) - Method in class ij.process.FloatProcessor: Returns the value of the pixel at (x,y) as a float.
getPixelValue(int, int) - Method in class ij.process.ImageProcessor: Returns the value of the pixel at (x,y).
getPixelValue(int, int) - Method in class ij.process.ShortProcessor: Returns the value of the pixel at (x,y) as a float.
getPixels(int) - Method in class ij.ImageStack: Returns the pixel array for the specified slice, were 1<=n<=nslices.
getPixels(int) - Method in class ij.VirtualStack: Returns the pixel array for the specified slice, were 1<=n<=nslices.
getPixels() - Method in class ij.gui.Line: Returns the pixel values along this line.
getPixels() - Method in class ij.process.ByteProcessor: Returns a reference to the byte array containing this image's pixel data.
getPixels() - Method in class ij.process.ColorProcessor: Returns a reference to the int array containing this image's pixel data.
getPixels() - Method in class ij.process.FloatProcessor: Returns a reference to the float array containing this image's pixel data.
getPixels() - Method in class ij.process.ImageProcessor: Returns a reference to this image's pixel array.
getPixels() - Method in class ij.process.ShortProcessor: Returns a reference to the short array containing this image's pixel data.
getPixelsCopy() - Method in class ij.process.ByteProcessor: Returns a copy of the pixel data.
getPixelsCopy() - Method in class ij.process.ColorProcessor: Returns a copy of the pixel data.
getPixelsCopy() - Method in class ij.process.FloatProcessor: Returns a copy of the pixel data.
getPixelsCopy() - Method in class ij.process.ImageProcessor: Returns a copy of the pixel data.
getPixelsCopy() - Method in class ij.process.ShortProcessor: Returns a copy of the pixel data.
getPlotSize() - Method in class ij.gui.ProfilePlot: Returns the size of the plot that createWindow() creates.
getPlugInsPath() - Static method in class ij.Menus: Returns the path to the user plugins directory or null if the plugins directory was not found.
getPluginCount() - Method in class ij.Menus
getPlugins() - Static method in class ij.Menus: Returns a list of the plugins in the plugins menu.
getPolygon() - Method in class ij.gui.Line
getPolygon() - Method in class ij.gui.OvalRoi: Returns this OvalRoi as a polygon.
getPolygon() - Method in class ij.gui.PolygonRoi: Returns this PolygonRoi as a Polygon.
getPolygon() - Method in class ij.gui.Roi: Returns the outline of this selection as a Polygon, or null if this is a straight line selection.
getPopupMenu() - Static method in class ij.Menus
getPort() - Static method in class ij.ImageJ: Returns the port that ImageJ checks on startup to see if another instance is running.
getPowerSpectrum() - Method in class ij.process.FHT: Returns an 8-bit power spectrum, log-scaled to 1-254.
getPrecision() - Static method in class ij.plugin.filter.Analyzer: Returns the number of digits displayed to the right of decimal point.
getPreferredLocation() - Method in class ij.ImageJ
getPreferredSize() - Method in class ij.gui.ImageCanvas
getPreferredSize() - Method in class ij.gui.MultiLineLabel
getPreferredSize() - Method in class ij.gui.ProgressBar
getPreferredSize() - Method in class ij.gui.Toolbar
getPreferredSize() - Method in class ij.gui.TrimmedButton
getPrefsDir() - Static method in class ij.Prefs: Gets the path to the directory where the preferences file (IJPrefs.txt) is saved.
getPreviewCheckbox() - Method in class ij.gui.GenericDialog: Returns a reference to the Preview Checkbox.
getProcessor(int) - Method in class ij.CompositeImage
getProcessor() - Method in class ij.ImagePlus: Returns a reference to the current ImageProcessor.
getProcessor(int) - Method in class ij.ImageStack: Returns an ImageProcessor for the specified slice, were 1<=n<=nslices.
getProcessor(int) - Method in class ij.VirtualStack: Returns an ImageProcessor for the specified slice, were 1<=n<=nslices.
getProcessor() - Method in class ij.gui.Plot: Returns the plot as an ImageProcessor.
getProcessor(int) - Method in class ij.plugin.AVI_Reader: Returns an ImageProcessor for the specified frame of this virtual stack (if it is one) where 1<=n<=nslices.
getProcessor(int) - Method in class ij.plugin.FileInfoVirtualStack: Returns an ImageProcessor for the specified image, were 1<=n<=nImages.
getProcessor(int) - Method in class ij.plugin.ListVirtualStack: Returns an ImageProcessor for the specified slice, were 1<=n<=nslices.
getProfile() - Method in class ij.gui.ProfilePlot: Returns the profile plot data.
getProgram() - Method in class ij.plugin.MacroInstaller
getProgressBar() - Method in class ij.ImageJ
getProjection() - Method in class ij.plugin.ZProjector: Retrieve results of most recent projection operation.
getProperties() - Method in class ij.ImagePlus: Returns this image's Properties.
getProperty(String) - Method in class ij.ImagePlus: Returns the property associated with 'key'.
getQuality() - Static method in class ij.plugin.JpegWriter: Obsolete, replaced by FileSaver.getJpegQuality().
getRGB(byte[], byte[], byte[]) - Method in class ij.process.ColorProcessor: Returns the red, green and blue planes as 3 byte arrays.
getRGBRow(ImageStack, int, int, int, int, int, int[]) - Method in class ij.plugin.filter.Projector
getROIs() - Method in class ij.plugin.frame.RoiManager: Returns the ROI Hashtable.
getRSquared() - Method in class ij.measure.CurveFitter: Returns R^2, where 1.0 is best.
getRawLength() - Method in class ij.gui.Line: Returns the length of this line in pixels.
getRawType(int) - Static method in class ij.macro.ExtensionDescriptor
getRawValue(double) - Method in class ij.measure.Calibration: Converts a density calibrated value into a raw pixel value.
getRedirectImage(ImagePlus) - Static method in class ij.plugin.filter.Analyzer: Returns the image selected in the "Redirect To:" popup menu of the Analyze/Set Measurements dialog or null if "None" is selected, the image was not found or the image is not the same size as currentImage.
getReds() - Method in class ij.LookUpTable
getResiduals() - Method in class ij.measure.CurveFitter: Returns residuals array ie.
getRestarts() - Method in class ij.measure.CurveFitter: Get number of simplex restarts to do
getResultString() - Method in class ij.measure.CurveFitter: Get a string description of the curve fitting results for easy output.
getResultsTable() - Static method in class ij.measure.ResultsTable: Returns the ResultsTable used by the Measure command.
getResultsTable() - Static method in class ij.plugin.filter.Analyzer: Returns the default results table.
getRoi() - Method in class ij.ImagePlus: Returns the current selection, or null if there is no selection.
getRoi() - Method in class ij.ImageStack
getRoi() - Method in class ij.io.RoiDecoder: Returns the ROI.
getRoi() - Method in class ij.process.ImageProcessor: Returns a Rectangle that represents the current region of interest.
getRois() - Method in class ij.gui.ShapeRoi: Converts a Shape into Roi object(s).
getRoisAsArray() - Method in class ij.plugin.frame.RoiManager: Returns the ROIs as an array.
getRoot() - Method in class ij.plugin.ControlPanel
getRow(int, int, int[], int) - Method in class ij.process.ImageProcessor: Returns the pixel values along the horizontal line starting at (x,y).
getRowAsString(int) - Method in class ij.measure.ResultsTable: Returns a tab-delimited string representing the given row, where 0<=row<=counter-1.
getSD() - Method in class ij.measure.CurveFitter: Returns the standard deviation of the residuals.
getSD() - Static method in class ij.plugin.filter.Filters: Returns the default standard deviation used by Process/Noise/Add Specified Noise.
getSaveAsMenu() - Static method in class ij.Menus
getScreenSize() - Static method in class ij.IJ: Returns the size, in pixels, of the primary display.
getSelectedRoisAsArray() - Method in class ij.plugin.frame.RoiManager: Returns the selected ROIs as an array, or all the ROIs if none are selected.
getSelectionEnd() - Method in class ij.text.TextPanel: Returns the index of the last selected line, or -1 if there is no slection.
getSelectionStart() - Method in class ij.text.TextPanel: Returns the index of the first selected line, or -1 if there is no slection.
getShapeAsArray() - Method in class ij.gui.ShapeRoi: Retrieves the end points and control points of the path as a float array.
getShapeRoi() - Method in class ij.io.RoiDecoder
getShortSliceLabel(int) - Method in class ij.ImageStack: Returns a shortened version (up to the first 60 characters or first newline and suffix removed) of the label of the specified slice.
getShortTitle() - Method in class ij.ImagePlus: Returns a shortened version of image name that does not include spaces or a file name extension.
getShortcuts() - Static method in class ij.Menus: Returns the hashtable that associates shortcuts with commands.
getShowAllColor() - Static method in class ij.gui.ImageCanvas: Returns the color used for "Show All" mode.
getShowAllROIs() - Method in class ij.gui.ImageCanvas
getSize() - Method in class ij.ImageStack: Returns the number of slices in this stack.
getSize() - Method in class ij.VirtualStack: Returns the number of slices in this stack.
getSize() - Static method in class ij.gui.TextRoi: Returns the current font size.
getSize() - Method in class ij.plugin.AVI_Reader: Returns the number of images in this virtual stack (if it is one)
getSize() - Method in class ij.plugin.FileInfoVirtualStack: Returns the number of images in this stack.
getSize() - Method in class ij.plugin.ListVirtualStack: Returns the number of images in this stack.
getSlice() - Method in class ij.ImagePlus
getSliceLabel(int) - Method in class ij.ImageStack: Returns the label of the specified slice, were 1<=n<=nslices.
getSliceLabel(int) - Method in class ij.VirtualStack: Returns the label of the Nth image.
getSliceLabel(int) - Method in class ij.plugin.AVI_Reader: Returns the label of the specified slice in this virtual stack (if it is one).
getSliceLabel(int) - Method in class ij.plugin.FileInfoVirtualStack: Returns the label of the Nth image.
getSliceLabel(int) - Method in class ij.plugin.ListVirtualStack: Returns the name of the specified image.
getSliceLabels() - Method in class ij.ImageStack: Returns the slice labels as an array of Strings.
getSliceNumber(String) - Method in class ij.gui.ImageCanvas
getSliceNumber() - Method in class ij.plugin.filter.PlugInFilterRunner: Return the slice number currently processed by the calling thread.
getSliceNumber(String) - Method in class ij.plugin.frame.RoiManager: Returns the slice number associated with the specified name, or -1 if the name does not include a slice number.
getSliders() - Method in class ij.gui.GenericDialog: Returns the Vector containing the sliders (Scrollbars).
getSnapshotPixels() - Method in class ij.process.ByteProcessor
getSnapshotPixels() - Method in class ij.process.ColorProcessor: Returns a reference to the snapshot pixel array.
getSnapshotPixels() - Method in class ij.process.FloatProcessor
getSnapshotPixels() - Method in class ij.process.ImageProcessor: Returns a reference to the snapshot (undo) buffer, or null.
getSnapshotPixels() - Method in class ij.process.ShortProcessor
getSrcRect() - Method in class ij.gui.ImageCanvas
getStack() - Method in class ij.ImagePlus: Returns the image stack.
getStackIndex(int, int, int) - Method in class ij.ImagePlus: Returns that stack index (1-based) corresponding to the specified position.
getStackSize() - Method in class ij.ImagePlus: If this is a stack, returns the number of slices, else returns 1.
getStartTime() - Method in class ij.ImagePlus: Returns the time in milliseconds when startTiming() was last called.
getState() - Method in class ij.gui.Roi
getStatistics() - Method in class ij.ImagePlus: Returns an ImageStatistics object generated using the standard measurement options (area, mean, mode, min and max).
getStatistics(int) - Method in class ij.ImagePlus: Returns an ImageStatistics object generated using the specified measurement options.
getStatistics(int, int) - Method in class ij.ImagePlus: Returns an ImageStatistics object generated using the specified measurement options and histogram bin count.
getStatistics(int, int, double, double) - Method in class ij.ImagePlus: Returns an ImageStatistics object generated using the specified measurement options, histogram bin count and histogram range.
getStatistics(ImageProcessor, int, Calibration) - Static method in class ij.process.ImageStatistics
getStatusBar() - Method in class ij.ImageJ
getString(String, String) - Static method in class ij.IJ: Allows the user to enter a string in a dialog box.
getString(String) - Static method in class ij.Prefs: Finds an string in IJ_Props or IJ_Prefs.txt.
getString(String, String) - Static method in class ij.Prefs: Finds an string in IJ_Props or IJ_Prefs.txt.
getStringFields() - Method in class ij.gui.GenericDialog: Returns the Vector containing the string TextFields.
getStringVariable(String) - Method in class ij.macro.Interpreter
getStringWidth(String) - Method in class ij.process.ImageProcessor: Returns the width in pixels of the specified string.
getStringWidth(String, FontMetrics, Graphics) - Static method in class ij.util.Java2
getStroke() - Method in class ij.gui.Roi: Returns the Stroke used to draw this ROI, or null if no Stroke is used.
getStyle() - Static method in class ij.gui.TextRoi: Returns the current font style.
getSumResidualsSqr() - Method in class ij.measure.CurveFitter
getSymbolTable() - Method in class ij.macro.Program
getTempCurrentImage() - Static method in class ij.WindowManager: Returns the temporary current image for this thread, or null.
getText() - Method in class ij.plugin.frame.Editor
getText() - Method in class ij.plugin.frame.Recorder
getText() - Method in class ij.text.TextPanel: Returns all the text as a string.
getTextArea() - Method in class ij.plugin.frame.Editor
getTextArea1() - Method in class ij.gui.GenericDialog: Returns a reference to textArea1.
getTextArea2() - Method in class ij.gui.GenericDialog: Returns a reference to textArea2.
getTextPanel() - Static method in class ij.IJ: Returns a reference to the "Results" window TextPanel.
getTextPanel() - Method in class ij.text.TextWindow: Returns a reference to this TextWindow's TextPanel.
getThreads() - Static method in class ij.Prefs: Returns the number of threads used by PlugInFilters to process stacks.
getThreshold(String, int[]) - Method in class ij.process.AutoThresholder
getTiffInfo() - Method in class ij.io.TiffDecoder
getTimeUnit() - Method in class ij.measure.Calibration: Returns the distance unit (e.g.
getTitle() - Method in class ij.ImagePlus: Returns the image name.
getTolerance() - Static method in class ij.plugin.WandToolOptions
getToolId() - Static method in class ij.gui.Toolbar: Returns the ID of the current tool (Toolbar.RECTANGLE, Toolbar.OVAL, etc.).
getToolId(String) - Method in class ij.gui.Toolbar: Returns the ID of the tool whose name (the description displayed in the status bar) starts with the specified string, or -1 if the tool is not found.
getTransferData(DataFlavor) - Method in class ij.plugin.Clipboard
getTransferDataFlavors() - Method in class ij.plugin.Clipboard
getTransparentIndex() - Static method in class ij.Prefs: Returns the transparent index (0-255), or -1 if transparency is disabled.
getType() - Method in class ij.ImagePlus: Returns the current image type (ImagePlus.GRAY8, ImagePlus.GRAY16, ImagePlus.GRAY32, ImagePlus.COLOR_256 or ImagePlus.COLOR_RGB).
getType() - Method in class ij.gui.Roi
getTypeAsString() - Method in class ij.gui.Roi: Convenience method that converts Roi type to a human-readable form.
getTypeName(int) - Static method in class ij.macro.ExtensionDescriptor
getUMeans() - Static method in class ij.plugin.filter.Analyzer: Returns an array containing the first 20 uncalibrated means.
getUncalibratedLength() - Method in class ij.gui.PolygonRoi
getUniqueName(String) - Static method in class ij.WindowManager: Returns a unique name by adding, before the extension, -1, -2, etc.
getUnit() - Method in class ij.measure.Calibration: Returns the default length unit (e.g.
getUnits() - Method in class ij.measure.Calibration: Returns the plural form of the length unit (e.g.
getValue(String, String, String) - Static method in class ij.Macro
getValue(String) - Method in class ij.gui.GenericDialog
getValue(int, int) - Method in class ij.measure.ResultsTable: Obsolete, replaced by getValueAsDouble.
getValue(String, int) - Method in class ij.measure.ResultsTable: Returns the value of the specified column and row, where column is the column heading and row is a number greater than or equal zero and less than value returned by getCounter().
getValueAsDouble(int, int) - Method in class ij.measure.ResultsTable: Returns the value of the given column and row, where column must be less than or equal the value returned by getLastColumn() and row must be greater than or equal zero and less than the value returned by getCounter().
getValueUnit() - Method in class ij.measure.Calibration: Returns the value unit.
getVariable(String) - Method in class ij.macro.Interpreter
getVariables() - Method in class ij.macro.Interpreter
getVersion() - Static method in class ij.IJ: Returns the ImageJ version number as a string.
getVersion() - Method in class ij.plugin.ControlPanel
getWeightingFactors() - Static method in class ij.process.ColorProcessor: Returns the three weighting factors used by getPixelValue(), getHistogram() and convertToByte() to do color conversions.
getWidth() - Method in class ij.ImagePlus
getWidth() - Method in class ij.ImageStack
getWidth() - Static method in class ij.gui.Line
getWidth() - Method in class ij.plugin.AVI_Reader: Returns the image width of the virtual stack
getWidth() - Method in class ij.plugin.FileInfoVirtualStack
getWidth() - Method in class ij.plugin.ListVirtualStack
getWidth() - Method in class ij.process.ImageProcessor: Returns the width of this image in pixels.
getWindow() - Method in class ij.ImagePlus: Returns the ImageWindow that is being used to display this image.
getWindowCount() - Static method in class ij.WindowManager: Returns the number of open image windows.
getX(double) - Method in class ij.measure.Calibration: Converts a x-coodinate in pixels to physical units (e.g.
getXCoordinates() - Method in class ij.gui.PolygonRoi: Returns this ROI's X-coordinates, which are relative to origin of the bounding box.
getXPoints() - Method in class ij.measure.CurveFitter
getXUnit() - Method in class ij.measure.Calibration: Returns the X length unit.
getXValues() - Method in class ij.gui.HistogramWindow
getXValues() - Method in class ij.gui.PlotWindow
getY(double) - Method in class ij.measure.Calibration: Converts a y-coodinate in pixels to physical units (e.g.
getY(double, int) - Method in class ij.measure.Calibration: Converts a y-coodinate in pixels to physical units (e.g.
getYCoordinates() - Method in class ij.gui.PolygonRoi: Returns this ROI's Y-coordinates, which are relative to origin of the bounding box.
getYPoints() - Method in class ij.measure.CurveFitter
getYUnit() - Method in class ij.measure.Calibration: Returns the Y length unit, or the default unit if 'yunit' is null.
getYValues() - Method in class ij.gui.PlotWindow
getZ(double) - Method in class ij.measure.Calibration: Converts a z-coodinate in pixels to physical units (e.g.
getZUnit() - Method in class ij.measure.Calibration: Returns the Z length unit, or the default unit if 'zunit' is null.
getf(int, int) - Method in class ij.process.ByteProcessor
getf(int) - Method in class ij.process.ByteProcessor
getf(int, int) - Method in class ij.process.ColorProcessor
getf(int) - Method in class ij.process.ColorProcessor
getf(int, int) - Method in class ij.process.FloatProcessor
getf(int) - Method in class ij.process.FloatProcessor
getf(int, int) - Method in class ij.process.ImageProcessor
getf(int) - Method in class ij.process.ImageProcessor
getf(int, int) - Method in class ij.process.ShortProcessor
getf(int) - Method in class ij.process.ShortProcessor
green - Variable in class ij.plugin.filter.RGBStackSplitter: These are the three stacks created by the split(ImageStack) method.
greens - Variable in class ij.io.FileInfo
grow(int, int) - Method in class ij.gui.FreehandRoi
grow(int, int) - Method in class ij.gui.Line
grow(int, int) - Method in class ij.gui.PolygonRoi
grow(int, int) - Method in class ij.gui.Roi

H

HAND - Static variable in class ij.gui.Toolbar
HANDLE_SIZE - Static variable in class ij.gui.Roi
HEIGHT_KEY - Static variable in class ij.text.TextWindow
HOST_COMPUTER - Static variable in class ij.io.TiffDecoder
HTMLDialog - class ij.gui.HTMLDialog.: This is modal dialog box that displays HTML formated text.
HTMLDialog(String, String) - Constructor for class ij.gui.HTMLDialog
Histogram - class ij.plugin.Histogram.: This plugin implements the Analyze/Histogram command.
Histogram() - Constructor for class ij.plugin.Histogram
HistogramWindow - class ij.gui.HistogramWindow.: This class is an extended ImageWindow that displays histograms.
HistogramWindow(ImagePlus) - Constructor for class ij.gui.HistogramWindow: Displays a histogram using the title "Histogram of ImageName".
HistogramWindow(String, ImagePlus, int) - Constructor for class ij.gui.HistogramWindow: Displays a histogram using the specified title and number of bins.
HistogramWindow(String, ImagePlus, int, double, double) - Constructor for class ij.gui.HistogramWindow: Displays a histogram using the specified title, number of bins and histogram range.
HistogramWindow(String, ImagePlus, int, double, double, int) - Constructor for class ij.gui.HistogramWindow: Displays a histogram using the specified title, number of bins, histogram range and yMax.
HistogramWindow(String, ImagePlus, ImageStatistics) - Constructor for class ij.gui.HistogramWindow: Displays a histogram using the specified title and ImageStatistics.
Hotkeys - class ij.plugin.Hotkeys.: Implements the Plugins/Hotkeys/Install and Remove commands.
Hotkeys() - Constructor for class ij.plugin.Hotkeys
HyperStackConverter - class ij.plugin.HyperStackConverter.: Implements the "Stack to HyperStack", "RGB to HyperStack" and "HyperStack to Stack" commands.
HyperStackConverter() - Constructor for class ij.plugin.HyperStackConverter
HyperStackReducer - class ij.plugin.HyperStackReducer.: Implements the Image/HyperStacks/Reduce Dimensionality command.
HyperStackReducer() - Constructor for class ij.plugin.HyperStackReducer: Default constructor
HyperStackReducer(ImagePlus) - Constructor for class ij.plugin.HyperStackReducer: Constructs a HyperStackReducer using the specified source image.
handCursor - Static variable in class ij.gui.ImageCanvas
handle(Throwable) - Method in interface ij.IJ.ExceptionHandler
handleColor - Variable in class ij.gui.Roi
handleException(Throwable) - Static method in class ij.IJ: Displays a stack trace.
handleExtension(String, Object[]) - Method in interface ij.macro.MacroExtension
handleMouseDown(int, int) - Method in class ij.gui.Roi
handleMouseDrag(int, int, int) - Method in class ij.gui.Roi
handleMouseUp(int, int) - Method in class ij.gui.FreehandRoi
handleMouseUp(int, int) - Method in class ij.gui.PointRoi
handleMouseUp(int, int) - Method in class ij.gui.PolygonRoi
handleMouseUp(int, int) - Method in class ij.gui.Roi
handleMouseUp(int, int) - Method in class ij.gui.TextRoi
handlePopupMenu(MouseEvent) - Method in class ij.gui.ImageCanvas
handleRoiMouseDown(MouseEvent) - Method in class ij.gui.ImageCanvas
handler - Variable in class ij.macro.ExtensionDescriptor
hasCustomLuts() - Method in class ij.CompositeImage
hasVars() - Method in class ij.macro.Program
hasWord(String) - Method in class ij.macro.Program
height - Variable in class ij.ImagePlus
height - Variable in class ij.io.FileInfo
height - Variable in class ij.process.ImageProcessor
height - Variable in class ij.process.ImageStatistics
hexDigits - Static variable in class ij.util.Tools: This array contains the 16 hex digits '0'-'F'.
hide() - Method in class ij.ImagePlus: Closes the window, if any, that is displaying this image.
hideCancelButton() - Method in class ij.gui.GenericDialog: No not display "Cancel" button.
hideErrorMessages() - Method in class ij.plugin.TextReader
hideProcessStackDialog - Static variable in class ij.IJ
hideProgress() - Method in class ij.process.ImageProcessor
histMax - Variable in class ij.process.ImageStatistics
histMin - Variable in class ij.process.ImageStatistics
histYMax - Variable in class ij.process.ImageStatistics
histogram - Variable in class ij.gui.HistogramWindow
histogram - Variable in class ij.process.ImageStatistics
histogram16 - Variable in class ij.process.ImageStatistics: 65536 element histogram (16-bit images only)
histogramMax - Variable in class ij.process.ImageProcessor
histogramMin - Variable in class ij.process.ImageProcessor
histogramSize - Variable in class ij.process.ImageProcessor

I

IF - Static variable in interface ij.macro.MacroConstants
IJ - class ij.IJ.: This class consists of static utility methods.
IJ() - Constructor for class ij.IJ
IJ.ExceptionHandler - interface ij.IJ.ExceptionHandler.
IMAGEIO - Static variable in class ij.io.FileInfo
IMAGE_DESCRIPTION - Static variable in class ij.io.TiffDecoder
IMAGE_LENGTH - Static variable in class ij.io.TiffDecoder
IMAGE_WIDTH - Static variable in class ij.io.TiffDecoder
IMPORT_MENU - Static variable in class ij.Menus
INCLUDE_HOLES - Static variable in class ij.plugin.filter.ParticleAnalyzer: Flood fill to ignore interior holes.
INDEX_OF - Static variable in interface ij.macro.MacroConstants
INTEGRATED_DENSITY - Static variable in interface ij.measure.Measurements
INTEGRATED_DENSITY - Static variable in class ij.measure.ResultsTable
INVALID_SHORTCUT - Static variable in class ij.Menus
INVERT - Static variable in interface ij.macro.MacroConstants
INVERT_Y - Static variable in interface ij.measure.Measurements
IN_PLACE - Static variable in class ij.plugin.Resizer
IN_TOLERANCE - Static variable in class ij.plugin.filter.MaximumFinder: Output type all points around the maximum within the tolerance
IPLAB - Static variable in class ij.io.TiffDecoder
IS - Static variable in interface ij.macro.MacroConstants
ISODATA - Static variable in class ij.process.ImageProcessor: Isodata thresholding method
ISODATA2 - Static variable in class ij.process.ImageProcessor: Modified isodata method used in Image/Adjust/Threshold tool
IS_ACTIVE - Static variable in interface ij.macro.MacroConstants
IS_KEY_DOWN - Static variable in interface ij.macro.MacroConstants
IS_NAN - Static variable in interface ij.macro.MacroConstants
IS_OPEN - Static variable in interface ij.macro.MacroConstants
ImageCalculator - class ij.plugin.ImageCalculator.: This plugin implements the Process/Image Calculator command.
ImageCalculator() - Constructor for class ij.plugin.ImageCalculator
ImageCanvas - class ij.gui.ImageCanvas.: This is a Canvas used to display images in a Window.
ImageCanvas(ImagePlus) - Constructor for class ij.gui.ImageCanvas
ImageConverter - class ij.process.ImageConverter.: This class converts an ImagePlus object to a different type.
ImageConverter(ImagePlus) - Constructor for class ij.process.ImageConverter: Constructs an ImageConverter based on an ImagePlus object.
ImageJ - class ij.ImageJ.: This frame is the main ImageJ class.
ImageJ() - Constructor for class ij.ImageJ: Creates a new ImageJ frame that runs as an application.
ImageJ(Applet) - Constructor for class ij.ImageJ: Creates a new ImageJ frame that runs as an applet.
ImageJ(Applet, int) - Constructor for class ij.ImageJ: If 'applet' is not null, creates a new ImageJ frame that runs as an applet.
ImageJApplet - class ij.ImageJApplet.: Runs ImageJ as an applet and optionally opens up to nine images using URLs passed as a parameters.
ImageJApplet() - Constructor for class ij.ImageJApplet
ImageJ_Updater - class ij.plugin.ImageJ_Updater.: This plugin implements the Help/Update ImageJ command.
ImageJ_Updater() - Constructor for class ij.plugin.ImageJ_Updater
ImageLayout - class ij.gui.ImageLayout.: This is a custom layout manager that supports resizing of zoomed images.
ImageLayout(ImageCanvas) - Constructor for class ij.gui.ImageLayout: Creates a new ImageLayout with center alignment and 5 pixel horizontal and vertical gaps.
ImageListener - interface ij.ImageListener.: Plugins that implement this interface are notified when an image window is opened, closed or updated.
ImageMath - class ij.plugin.filter.ImageMath.: This plugin implements ImageJ's Process/Math submenu.
ImageMath() - Constructor for class ij.plugin.filter.ImageMath
ImagePlus - class ij.ImagePlus.: This is an extended image class that supports 8-bit, 16-bit, 32-bit (real) and RGB images.
ImagePlus() - Constructor for class ij.ImagePlus: Constructs an uninitialized ImagePlus.
ImagePlus(String, Image) - Constructor for class ij.ImagePlus: Constructs an ImagePlus from an Image or BufferedImage.
ImagePlus(String, ImageProcessor) - Constructor for class ij.ImagePlus: Constructs an ImagePlus from an ImageProcessor.
ImagePlus(String) - Constructor for class ij.ImagePlus: Constructs an ImagePlus from a TIFF, BMP, DICOM, FITS, PGM, GIF or JPRG specified by a path or from a TIFF, DICOM, GIF or JPEG specified by a URL.
ImagePlus(String, ImageStack) - Constructor for class ij.ImagePlus: Constructs an ImagePlus from a stack.
ImageProcessor - class ij.process.ImageProcessor.: This abstract class is the superclass for classes that process the four data types (byte, short, float and RGB) supported by ImageJ.
ImageProcessor() - Constructor for class ij.process.ImageProcessor
ImageProperties - class ij.plugin.filter.ImageProperties.
ImageProperties() - Constructor for class ij.plugin.filter.ImageProperties
ImageReader - class ij.io.ImageReader.: Reads raw 8-bit, 16-bit or 32-bit (float or RGB) images from a stream or URL.
ImageReader(FileInfo) - Constructor for class ij.io.ImageReader: Constructs a new ImageReader using a FileInfo object to describe the file to be read.
ImageStack - class ij.ImageStack.: This class represents an expandable array of images.
ImageStack() - Constructor for class ij.ImageStack: Default constructor.
ImageStack(int, int) - Constructor for class ij.ImageStack: Creates a new, empty image stack.
ImageStack(int, int, int) - Constructor for class ij.ImageStack: Creates a new image stack with a capacity of 'size'.
ImageStack(int, int, ColorModel) - Constructor for class ij.ImageStack: Creates a new, empty image stack.
ImageStatistics - class ij.process.ImageStatistics.: Statistics, including the histogram, of an image or selection.
ImageStatistics() - Constructor for class ij.process.ImageStatistics
ImageWindow - class ij.gui.ImageWindow.: A frame for displaying images.
ImageWindow(String) - Constructor for class ij.gui.ImageWindow
ImageWindow(ImagePlus) - Constructor for class ij.gui.ImageWindow
ImageWindow(ImagePlus, ImageCanvas) - Constructor for class ij.gui.ImageWindow
ImageWriter - class ij.io.ImageWriter.: Writes a raw image described by a FileInfo object to an OutputStream.
ImageWriter(FileInfo) - Constructor for class ij.io.ImageWriter
ImagesToStack - class ij.plugin.ImagesToStack.: Implements the Image/Stacks/Images to Stack" command.
ImagesToStack() - Constructor for class ij.plugin.ImagesToStack
ImportDialog - class ij.io.ImportDialog.: This is a dialog box used to imports raw 8, 16, 24 and 32-bit images.
ImportDialog(String, String) - Constructor for class ij.io.ImportDialog
ImportDialog() - Constructor for class ij.io.ImportDialog
Info - class ij.plugin.filter.Info.: This plugin implements the Image/Show Info command.
Info() - Constructor for class ij.plugin.filter.Info
Installer - class ij.plugin.Installer.: Implements the Plugins/Shortcuts/Install...
Installer() - Constructor for class ij.plugin.Installer
Interpreter - class ij.macro.Interpreter.: This is the recursive descent parser/interpreter for the ImageJ macro language.
Interpreter() - Constructor for class ij.macro.Interpreter
IterFactor - Static variable in class ij.measure.CurveFitter
ic - Variable in class ij.gui.ImageWindow
ic - Variable in class ij.gui.Roi
ij - package ij
ij - Variable in class ij.gui.ImageCanvas
ij - Variable in class ij.gui.ImageWindow
ij.gui - package ij.gui
ij.io - package ij.io
ij.macro - package ij.macro
ij.measure - package ij.measure
ij.plugin - package ij.plugin
ij.plugin.filter - package ij.plugin.filter
ij.plugin.frame - package ij.plugin.frame
ij.process - package ij.process
ij.text - package ij.text
ij.util - package ij.util
image - Variable in class ij.process.ImageProcessor
imageClosed(ImagePlus) - Method in interface ij.ImageListener
imageClosed(ImagePlus) - Method in class ij.plugin.Orthogonal_Views
imageHeight - Variable in class ij.gui.ImageCanvas
imageOpened(ImagePlus) - Method in interface ij.ImageListener
imageOpened(ImagePlus) - Method in class ij.plugin.Orthogonal_Views
imageUpdate(Image, int, int, int, int, int) - Method in class ij.ImagePlus: Used by ImagePlus to monitor loading of images.
imageUpdated(ImagePlus) - Method in interface ij.ImageListener
imageUpdated - Variable in class ij.gui.ImageCanvas
imageUpdated(ImagePlus) - Method in class ij.plugin.Orthogonal_Views
imageWidth - Variable in class ij.gui.ImageCanvas
img - Variable in class ij.ImagePlus
img - Variable in class ij.process.ImageProcessor
imp - Variable in class ij.gui.ImageCanvas
imp - Variable in class ij.gui.ImageWindow
imp - Variable in class ij.gui.ProfilePlot
imp - Variable in class ij.gui.Roi
imp - Variable in class ij.plugin.filter.ParticleAnalyzer
in - Variable in class ij.io.TiffDecoder
incrementCounter() - Method in class ij.measure.ResultsTable: Increments the measurement counter by one.
info - Variable in class ij.io.FileInfo
info - Variable in class ij.measure.Calibration: Plugin writers can use this string to store information about the image.
init() - Method in class ij.ImageJApplet: Starts ImageJ if it's not already running.
inputStream - Variable in class ij.io.FileInfo
insert(ImageProcessor, int, int) - Method in class ij.process.ImageProcessor: Inserts the image contained in 'ip' at (xloc, yloc).
install(String) - Method in class ij.plugin.MacroInstaller
install(String, Menu) - Method in class ij.plugin.MacroInstaller
installFile(String) - Method in class ij.plugin.MacroInstaller
installFromIJJar(String) - Method in class ij.plugin.MacroInstaller: Installs a macro set contained in ij.jar.
installLibrary(String) - Method in class ij.plugin.MacroInstaller
installPlugin(String, char, String, String, ImageJ) - Static method in class ij.Menus: Adds a plugin based command to the end of a specified menu.
installUserPlugin(String, boolean) - Method in class ij.Menus
instanceColor - Variable in class ij.gui.Roi
intelByteOrder - Static variable in class ij.Prefs: Export Raw using little-endian byte order.
intelByteOrder - Variable in class ij.io.FileInfo
interpolate - Static variable in class ij.gui.PlotWindow: Interpolate line profiles.
interpolate - Variable in class ij.process.ImageProcessor
interpolateScaledImages - Static variable in class ij.Prefs: Display images scaled <100% using bilinear interpolation
interpolationMethod - Variable in class ij.process.ImageProcessor
invalidNumber() - Method in class ij.gui.GenericDialog: Returns true if one or more of the numeric fields contained an invalid number.
inverseTransform() - Method in class ij.process.FHT: Performs an inverse transform, converting this image into the space domain.
inversionTested - Variable in class ij.process.ImageProcessor
invert() - Method in class ij.process.FloatProcessor
invert() - Method in class ij.process.ImageProcessor: Inverts the image or ROI.
invert() - Method in class ij.process.ShortProcessor
invert() - Method in class ij.process.StackProcessor
invertLut() - Method in class ij.process.ColorProcessor: Does nothing since RGB images do not use LUTs.
invertLut() - Method in class ij.process.ImageProcessor: Inverts the values in this image's LUT (indexed color model).
invertedLut - Variable in class ij.process.ImageProcessor
ip - Variable in class ij.ImagePlus
is64Bit() - Static method in class ij.IJ: Returns true if ImageJ is running a 64-bit version of Java.
isAntialiased() - Static method in class ij.gui.TextRoi
isArea() - Method in class ij.gui.Roi: Returns true if this is an area selection.
isAutoRunAndHide() - Method in class ij.plugin.MacroInstaller: Returns true if an "AutoRunAndHide" macro was run/installed.
isBatchMode() - Static method in class ij.macro.Interpreter
isBatchModeRoiManager() - Static method in class ij.macro.Interpreter: Returns true if there is an internal batch mode RoiManager.
isBinary() - Method in class ij.process.ByteProcessor: Returns 'true' if this is a binary image (8-bit-image with only 0 and 255).
isBinary() - Method in class ij.process.ImageProcessor: Returns 'true' if this is a binary image (8-bit-image with only 0 and 255).
isClosed() - Method in class ij.gui.ImageWindow: Has this window been closed?
isColorLut() - Method in class ij.process.ImageProcessor: Returns true if this image uses a color LUT.
isComposite() - Method in class ij.ImagePlus: Returns true if this is a CompositeImage.
isDataFlavorSupported(DataFlavor) - Method in class ij.plugin.Clipboard
isDefaultLut() - Method in class ij.process.ImageProcessor: Returns true if the image is using the default grayscale LUT.
isDisplayedHyperStack() - Method in class ij.ImagePlus: Returns 'true' if this is a hyperstack currently being displayed in a StackWindow.
isGrayscale() - Method in class ij.LookUpTable: Returns true if this is a 256 entry grayscale LUT.
isHSB() - Method in class ij.ImageStack: Returns true if this is a 3-slice HSB stack.
isHandle(int, int) - Method in class ij.gui.Line: Returns a handle number if the specified screen coordinates are inside or near a handle, otherwise returns -1.
isHandle(int, int) - Method in class ij.gui.OvalRoi: Returns a handle number if the specified screen coordinates are inside or near a handle, otherwise returns -1.
isHandle(int, int) - Method in class ij.gui.PolygonRoi: Returns a handle number if the specified screen coordinates are inside or near a handle, otherwise returns -1.
isHandle(int, int) - Method in class ij.gui.Roi: Returns a handle number if the specified screen coordinates are inside or near a handle, otherwise returns -1.
isHandle(int, int) - Method in class ij.gui.ShapeRoi: Always returns -1 since ShapeRois do not have handles.
isHyperStack() - Method in class ij.ImagePlus: Returns 'true' if this image is a hyperstack.
isHyperStack() - Method in class ij.gui.StackWindow
isInvertedLut() - Method in class ij.ImagePlus: Returns true is this image uses an inverting LUT that displays zero as white and 255 as black.
isInvertedLut() - Method in class ij.process.ColorProcessor: Always returns false since RGB images do not use LUTs.
isInvertedLut() - Method in class ij.process.ImageProcessor: Returns true if this image uses an inverting LUT that displays zero as white and 255 as black.
isJava14() - Static method in class ij.IJ: Returns true if ImageJ is running on a Java 1.4 or greater JVM.
isJava15() - Static method in class ij.IJ: Returns true if ImageJ is running on a Java 1.5 or greater JVM.
isJava16() - Static method in class ij.IJ: Returns true if ImageJ is running on a Java 1.6 or greater JVM.
isJava17() - Static method in class ij.IJ: Returns true if ImageJ is running on a Java 1.7 or greater JVM.
isJava2() - Static method in class ij.IJ: Always returns true.
isKillable() - Method in class ij.process.ImageProcessor: Obsolete.
isLine() - Method in class ij.gui.Roi: Returns true if this is a line selection.
isLinux() - Static method in class ij.IJ: Returns true if ImageJ is running on Linux.
isLocked() - Method in class ij.ImagePlus: Returns 'true' if the image is locked.
isMacOSX() - Static method in class ij.IJ: Returns true if this machine is a Macintosh running OS X.
isMacintosh() - Static method in class ij.IJ: Returns true if this machine is a Macintosh.
isMacro() - Static method in class ij.IJ: Returns true if a macro is running, or if the run(), open() or newImage() method is executing.
isOptionalArg(int) - Static method in class ij.macro.ExtensionDescriptor
isOutputArg(int) - Static method in class ij.macro.ExtensionDescriptor
isProcessor() - Method in class ij.ImagePlus
isPseudoColorLut() - Method in class ij.process.ImageProcessor: Returns true if this image uses a pseudocolor or grayscale LUT, in other words, is this an image that can be filtered.
isRGB() - Method in class ij.ImageStack: Returns true if this is a 3-slice RGB stack.
isRedirectImage() - Static method in class ij.plugin.filter.Analyzer: Returns true if an image is selected in the "Redirect To:" popup menu of the Analyze/Set Measurements dialog box.
isResultsWindow() - Static method in class ij.IJ: Returns true if the "Results" window is open.
isSigned16Bit() - Method in class ij.measure.Calibration: Returns true if this is a signed 16-bit image.
isSplineFit() - Method in class ij.gui.PolygonRoi: Returns 'true' if this selection has been fitted with a spline.
isVirtual() - Method in class ij.ImageStack: Returns true if this is a virtual (disk resident) stack.
isVirtual() - Method in class ij.VirtualStack: Always return true.
isVisible() - Method in class ij.ImagePlus: Returns true if this image is currently being displayed in a window.
isVisible() - Method in class ij.gui.Roi: Returns true if this ROI is currently displayed on an image.
isVista() - Static method in class ij.IJ: Returns true if ImageJ is running on Windows Vista.
isWindows() - Static method in class ij.IJ: Returns true if this machine is running Windows.
itemStateChanged(ItemEvent) - Method in class ij.ImageJ: Handles CheckboxMenuItem state changes.
itemStateChanged(ItemEvent) - Method in class ij.gui.GenericDialog
itemStateChanged(ItemEvent) - Method in class ij.gui.Toolbar
itemStateChanged(ItemEvent) - Method in class ij.macro.FunctionFinder
itemStateChanged(ItemEvent) - Method in class ij.plugin.BatchProcesser
itemStateChanged(ItemEvent) - Method in class ij.plugin.Colors
itemStateChanged(ItemEvent) - Method in class ij.plugin.CommandFinder
itemStateChanged(ItemEvent) - Method in class ij.plugin.Resizer
itemStateChanged(ItemEvent) - Method in class ij.plugin.Slicer
itemStateChanged(ItemEvent) - Method in class ij.plugin.frame.Channels
itemStateChanged(ItemEvent) - Method in class ij.plugin.frame.ContrastAdjuster
itemStateChanged(ItemEvent) - Method in class ij.plugin.frame.Editor
itemStateChanged(ItemEvent) - Method in class ij.plugin.frame.Fitter
itemStateChanged(ItemEvent) - Method in class ij.plugin.frame.Fonts
itemStateChanged(ItemEvent) - Method in class ij.plugin.frame.LineWidthAdjuster
itemStateChanged(ItemEvent) - Method in class ij.plugin.frame.PasteController
itemStateChanged(ItemEvent) - Method in class ij.plugin.frame.RoiManager
itemStateChanged(ItemEvent) - Method in class ij.plugin.frame.ThresholdAdjuster
itemStateChanged(ItemEvent) - Method in class ij.text.TextWindow

J

JAVASCRIPT - Static variable in class ij.plugin.NewPlugin
JAVA_OR_TEXT - Static variable in class ij.io.Opener
JPEG - Static variable in class ij.Prefs
JPEG - Static variable in class ij.io.FileInfo
JPEG - Static variable in class ij.io.Opener
JPEG_COMPRESSION - Static variable in class ij.plugin.filter.AVI_Writer
JPEG_TABLES - Static variable in class ij.io.TiffDecoder
JS_NOT_FOUND - Static variable in class ij.plugin.frame.Editor
Java2 - class ij.util.Java2.: This class contains static methods that use the Java 2 API.
Java2() - Constructor for class ij.util.Java2
JavaProperties - class ij.plugin.JavaProperties.: Displays the Java system properties in a text window.
JavaProperties() - Constructor for class ij.plugin.JavaProperties
JavaScriptIncludes - Static variable in class ij.plugin.frame.Editor: ImportPackage statements added in front of scripts.
JpegWriter - class ij.plugin.JpegWriter.: The File/Save As/Jpeg command (FileSaver.saveAsJpeg() method) uses this plugin to save images in JPEG format.
JpegWriter() - Constructor for class ij.plugin.JpegWriter
justification - Variable in class ij.process.ImageProcessor

K

KEEP_PREVIEW - Static variable in interface ij.plugin.filter.ExtendedPlugInFilter: Set this flag if the last preview image may be kept as a result.
KEEP_THRESHOLD - Static variable in interface ij.plugin.filter.PlugInFilter: Set this flag to keep the invisible binary threshold from being reset.
KEY_PREFIX - Static variable in class ij.Prefs
KURTOSIS - Static variable in interface ij.measure.Measurements
KURTOSIS - Static variable in class ij.measure.ResultsTable
kNPoints - Variable in class ij.plugin.filter.RankFilters
kRadius - Variable in class ij.plugin.filter.RankFilters
keyPressed(KeyEvent) - Method in class ij.ImageJ
keyPressed(KeyEvent) - Method in class ij.gui.GenericDialog
keyPressed(KeyEvent) - Method in class ij.gui.MessageDialog
keyPressed(KeyEvent) - Method in class ij.gui.SaveChangesDialog
keyPressed(KeyEvent) - Method in class ij.gui.WaitForUserDialog
keyPressed(KeyEvent) - Method in class ij.gui.YesNoCancelDialog
keyPressed(KeyEvent) - Method in class ij.macro.FunctionFinder
keyPressed(KeyEvent) - Method in class ij.plugin.CommandFinder
keyPressed(KeyEvent) - Method in class ij.plugin.Orthogonal_Views
keyPressed(KeyEvent) - Method in class ij.text.TextPanel
keyReleased(KeyEvent) - Method in class ij.ImageJ
keyReleased(KeyEvent) - Method in class ij.gui.GenericDialog
keyReleased(KeyEvent) - Method in class ij.gui.MessageDialog
keyReleased(KeyEvent) - Method in class ij.gui.SaveChangesDialog
keyReleased(KeyEvent) - Method in class ij.gui.WaitForUserDialog
keyReleased(KeyEvent) - Method in class ij.gui.YesNoCancelDialog
keyReleased(KeyEvent) - Method in class ij.macro.FunctionFinder
keyReleased(KeyEvent) - Method in class ij.plugin.CommandFinder
keyReleased(KeyEvent) - Method in class ij.plugin.Orthogonal_Views
keyReleased(KeyEvent) - Method in class ij.text.TextPanel
keyTyped(KeyEvent) - Method in class ij.ImageJ
keyTyped(KeyEvent) - Method in class ij.gui.GenericDialog
keyTyped(KeyEvent) - Method in class ij.gui.MessageDialog
keyTyped(KeyEvent) - Method in class ij.gui.SaveChangesDialog
keyTyped(KeyEvent) - Method in class ij.gui.WaitForUserDialog
keyTyped(KeyEvent) - Method in class ij.gui.YesNoCancelDialog
keyTyped(KeyEvent) - Method in class ij.macro.FunctionFinder
keyTyped(KeyEvent) - Method in class ij.plugin.CommandFinder
keyTyped(KeyEvent) - Method in class ij.plugin.Orthogonal_Views
keyTyped(KeyEvent) - Method in class ij.text.TextPanel
keywordIDs - Static variable in interface ij.macro.MacroConstants
keywords - Static variable in interface ij.macro.MacroConstants
killProcessor() - Method in class ij.ImagePlus: Obsolete.
killRoi() - Method in class ij.ImagePlus: Deletes the current region of interest.
killStack() - Method in class ij.ImagePlus
kurtosis - Variable in class ij.process.ImageStatistics

L

LABELS - Static variable in interface ij.measure.Measurements
LAST_HEADING - Static variable in class ij.measure.ResultsTable
LAST_INDEX_OF - Static variable in interface ij.macro.MacroConstants
LEFT_JUSTIFY - Static variable in class ij.process.ImageProcessor: Left justify text.
LEFT_MARGIN - Static variable in class ij.gui.Plot: the margin width left of the plot frame (enough for 5-digit numbers such as unscaled 16-bit data
LEGACY_MODE - Static variable in class ij.gui.Wand: Wand operation type similar to that of ImageJ 1.42p and before; for backwards compatibility.
LENGTH_OF - Static variable in interface ij.macro.MacroConstants
LIMIT - Static variable in interface ij.measure.Measurements
LINE - Static variable in class ij.gui.Plot: Connect points with solid lines.
LINE - Static variable in class ij.gui.PlotWindow: Connect points with solid lines.
LINE - Static variable in class ij.gui.Roi
LINE - Static variable in class ij.gui.Toolbar
LINE_TO - Static variable in interface ij.macro.MacroConstants
LIST - Static variable in interface ij.macro.MacroConstants
LOC_KEY - Static variable in class ij.plugin.frame.ContrastAdjuster
LOC_KEY - Static variable in class ij.plugin.frame.Fonts
LOC_KEY - Static variable in class ij.plugin.frame.LineWidthAdjuster
LOC_KEY - Static variable in class ij.plugin.frame.RoiManager
LOC_KEY - Static variable in class ij.plugin.frame.ThresholdAdjuster
LOC_KEY - Static variable in class ij.text.TextWindow
LOG - Static variable in interface ij.macro.MacroConstants
LOG - Static variable in class ij.measure.Calibration
LOG - Static variable in class ij.measure.CurveFitter
LOG2 - Static variable in class ij.measure.Calibration
LOG2 - Static variable in class ij.measure.CurveFitter
LOGICAL_AND - Static variable in interface ij.macro.MacroConstants
LOGICAL_OR - Static variable in interface ij.macro.MacroConstants
LOG_LOC_KEY - Static variable in class ij.text.TextWindow
LT - Static variable in interface ij.macro.MacroConstants
LTE - Static variable in interface ij.macro.MacroConstants
LUT - Static variable in class ij.io.Opener
LUT - class ij.process.LUT.
LUT(byte[], byte[], byte[]) - Constructor for class ij.process.LUT
LUT(int, int, byte[], byte[], byte[]) - Constructor for class ij.process.LUT
LUT(IndexColorModel, double, double) - Constructor for class ij.process.LUT
LUT_Editor - class ij.plugin.LUT_Editor.
LUT_Editor() - Constructor for class ij.plugin.LUT_Editor
LZW - Static variable in class ij.io.FileInfo
LZW_WITH_DIFFERENCING - Static variable in class ij.io.FileInfo
Line - class ij.gui.Line.: This class represents a straight line selection.
Line(int, int, int, int) - Constructor for class ij.gui.Line: Creates a new straight line selection using the specified starting and ending offscreen integer coordinates.
Line(double, double, double, double) - Constructor for class ij.gui.Line: Creates a new straight line selection using the specified starting and ending offscreen double coordinates.
Line(int, int, ImagePlus) - Constructor for class ij.gui.Line: Starts the process of creating a new user-generated straight line selection.
Line(int, int, int, int, ImagePlus) - Constructor for class ij.gui.Line: Obsolete
LineGraphAnalyzer - class ij.plugin.filter.LineGraphAnalyzer.: Implements ImageJ's Analyze/Tools/Analyze Line Graph command.
LineGraphAnalyzer() - Constructor for class ij.plugin.filter.LineGraphAnalyzer
LineWidthAdjuster - class ij.plugin.frame.LineWidthAdjuster.: Adjusts the width of line selections.
LineWidthAdjuster() - Constructor for class ij.plugin.frame.LineWidthAdjuster
ListVirtualStack - class ij.plugin.ListVirtualStack.: This plugin opens images specified by list of file paths as a virtual stack.
ListVirtualStack() - Constructor for class ij.plugin.ListVirtualStack
LookUpTable - class ij.LookUpTable.: This class represents a color look-up table.
LookUpTable(Image) - Constructor for class ij.LookUpTable: Constructs a LookUpTable object from an AWT Image.
LookUpTable(ColorModel) - Constructor for class ij.LookUpTable: Constructs a LookUpTable object from a ColorModel.
LutApplier - class ij.plugin.filter.LutApplier.: This plugin implements the Image/Lookup Tables/Apply LUT command.
LutApplier() - Constructor for class ij.plugin.filter.LutApplier
LutLoader - class ij.plugin.LutLoader.: Opens NIH Image look-up tables (LUTs), 768 byte binary LUTs (256 reds, 256 greens and 256 blues), LUTs in text format, or generates the LUT specified by the string argument passed to the run() method.
LutLoader() - Constructor for class ij.plugin.LutLoader
LutViewer - class ij.plugin.filter.LutViewer.: Displays the active image's look-up table.
LutViewer() - Constructor for class ij.plugin.filter.LutViewer
label - Variable in class ij.gui.MessageDialog
label - Variable in class ij.gui.WaitForUserDialog
label(ImageProcessor) - Method in class ij.plugin.filter.Filler
layoutContainer(Container) - Method in class ij.gui.ImageLayout: Lays out the container and calls ImageCanvas.resizeCanvas() to adjust the image canvas size as needed.
lineRadius - Variable in class ij.plugin.filter.RankFilters
lineTo(int, int) - Method in class ij.process.ImageProcessor: Draws a line from the current drawing location to (x2,y2).
lineWidth - Static variable in class ij.gui.Roi
lineWidth - Variable in class ij.process.ImageProcessor
list - Variable in class ij.gui.HistogramWindow
listAllThreads(PrintWriter) - Static method in class ij.plugin.ThreadLister
listCommands() - Method in class ij.plugin.CommandLister
listShortcuts() - Method in class ij.plugin.CommandLister
listValues - Static variable in class ij.gui.PlotWindow: Display the XY coordinates in a separate window.
load(Object, Applet) - Static method in class ij.Prefs: Finds and loads the ImageJ configuration file, "IJ_Props.txt".
load(BufferedReader) - Method in class ij.text.TextWindow: Appends the text in the specified file to the end of this TextWindow.
lock() - Method in class ij.ImagePlus: Locks the image so other threads can test to see if it is in use.
lockSilently() - Method in class ij.ImagePlus: Similar to lock, but doesn't beep and display an error message if the attempt to lock the image fails.
locked - Variable in class ij.ImagePlus
log(String) - Static method in class ij.IJ
log - Variable in class ij.gui.HistogramWindow
log() - Method in class ij.process.FloatProcessor
log() - Method in class ij.process.ImageProcessor: Performs a log transform on the image or ROI.
log() - Method in class ij.process.ShortProcessor
logScale - Variable in class ij.gui.HistogramWindow
longOffset - Variable in class ij.io.FileInfo
loop - Variable in class ij.measure.Calibration: Loop back and forth when animating stack
lostOwnership(Clipboard, Transferable) - Method in class ij.gui.HistogramWindow
lostOwnership(Clipboard, Transferable) - Method in class ij.gui.PlotWindow
lostOwnership(Clipboard, Transferable) - Method in class ij.plugin.frame.Editor
lostOwnership(Clipboard, Transferable) - Method in class ij.text.TextPanel
lut - Variable in class ij.gui.HistogramWindow
lutAnimation - Variable in class ij.process.ImageProcessor
lutMessage - Static variable in class ij.plugin.ZProjector
lutSize - Variable in class ij.io.FileInfo
lutUpdateMode - Variable in class ij.process.ImageProcessor
lzwUncompress(byte[]) - Method in class ij.io.ImageReader: Utility method for decoding an LZW-compressed image strip.

M

MACRO - Static variable in interface ij.macro.MacroConstants
MACRO - Static variable in class ij.plugin.NewPlugin
MACROS_MENU_ITEMS - Static variable in class ij.plugin.frame.Editor
MACRO_CANCELED - Static variable in class ij.Macro
MACRO_KEY - Static variable in class ij.plugin.filter.ImageMath
MAGNIFIER - Static variable in class ij.gui.Toolbar
MAJOR - Static variable in class ij.measure.ResultsTable
MAKE_LINE - Static variable in interface ij.macro.MacroConstants
MAKE_OVAL - Static variable in interface ij.macro.MacroConstants
MAKE_POINT - Static variable in interface ij.macro.MacroConstants
MAKE_POLYGON - Static variable in interface ij.macro.MacroConstants
MAKE_RECTANGLE - Static variable in interface ij.macro.MacroConstants
MAKE_SELECTION - Static variable in interface ij.macro.MacroConstants
MAKE_TEXT - Static variable in interface ij.macro.MacroConstants
MASKS - Static variable in class ij.plugin.filter.ParticleAnalyzer
MATCHES - Static variable in interface ij.macro.MacroConstants
MAX - Static variable in class ij.measure.ResultsTable
MAX - Static variable in class ij.plugin.filter.RankFilters
MAX - Static variable in interface ij.process.Blitter: dst=max(dst,src)
MAX_CHANNELS - Static variable in class ij.CompositeImage
MAX_COLUMNS - Static variable in class ij.measure.ResultsTable: Obsolete; use getLastColumn().
MAX_MACROS - Static variable in class ij.plugin.MacroInstaller
MAX_METHOD - Static variable in class ij.plugin.ZProjector
MAX_OF - Static variable in interface ij.macro.MacroConstants
MAX_OPEN_RECENT_ITEMS - Static variable in class ij.Menus
MAX_SIZE - Static variable in class ij.plugin.MacroInstaller
MAX_SIZE - Static variable in class ij.plugin.frame.Editor
MAX_SLIDERS - Static variable in class ij.gui.GenericDialog
MAX_STANDARDS - Static variable in interface ij.measure.Measurements: Maximum number of calibration standard (20)
MEAN - Static variable in interface ij.measure.Measurements
MEAN - Static variable in class ij.measure.ResultsTable
MEAN - Static variable in class ij.plugin.filter.RankFilters
MEDIAN - Static variable in interface ij.measure.Measurements
MEDIAN - Static variable in class ij.measure.ResultsTable
MEDIAN - Static variable in class ij.plugin.filter.RankFilters
MEDIAN_METHOD - Static variable in class ij.plugin.ZProjector
MENU_BAR - Static variable in class ij.plugin.frame.Editor
MENU_SIZE - Static variable in class ij.Prefs
METAMORPH1 - Static variable in class ij.io.TiffDecoder
METAMORPH2 - Static variable in class ij.io.TiffDecoder
META_DATA - Static variable in class ij.io.TiffDecoder
META_DATA_BYTE_COUNTS - Static variable in class ij.io.TiffDecoder
METHODS - Static variable in class ij.plugin.ZProjector
MIN - Static variable in class ij.measure.ResultsTable
MIN - Static variable in class ij.plugin.filter.RankFilters
MIN - Static variable in interface ij.process.Blitter: dst=min(dst,src)
MINOR - Static variable in class ij.measure.ResultsTable
MINUS_EQUAL - Static variable in interface ij.macro.MacroConstants
MINUS_MINUS - Static variable in interface ij.macro.MacroConstants
MIN_FERET - Static variable in class ij.measure.ResultsTable
MIN_HEIGHT - Static variable in class ij.gui.ImageWindow
MIN_MAX - Static variable in interface ij.measure.Measurements
MIN_METHOD - Static variable in class ij.plugin.ZProjector
MIN_OF - Static variable in interface ij.macro.MacroConstants
MIN_WIDTH - Static variable in class ij.gui.ImageWindow
MODE - Static variable in interface ij.measure.Measurements
MODE - Static variable in class ij.measure.ResultsTable
MODE_KEY - Static variable in class ij.plugin.frame.ThresholdAdjuster
MONOSPACED - Static variable in class ij.plugin.frame.Editor
MOVE_TO - Static variable in interface ij.macro.MacroConstants
MOVING - Static variable in class ij.gui.Roi
MOVING_HANDLE - Static variable in class ij.gui.Roi
MULTIPLY - Static variable in interface ij.process.Blitter: dst=src*src
MUL_EQUAL - Static variable in interface ij.macro.MacroConstants
Macro - class ij.Macro.: The class contains static methods that perform macro operations.
Macro() - Constructor for class ij.Macro
MacroConstants - interface ij.macro.MacroConstants.
MacroExtension - interface ij.macro.MacroExtension.
MacroInstaller - class ij.plugin.MacroInstaller.: This plugin implements the Plugins/Macros/Install Macros command.
MacroInstaller() - Constructor for class ij.plugin.MacroInstaller
MacroRunner - class ij.macro.MacroRunner.: This class runs macros in a separate thread.
MacroRunner() - Constructor for class ij.macro.MacroRunner: Create a MacrRunner.
MacroRunner(String) - Constructor for class ij.macro.MacroRunner: Create a new object that interprets macro source in a separate thread.
MacroRunner(String, Editor) - Constructor for class ij.macro.MacroRunner: Create a new object that interprets macro source in debug mode if 'editor' is not null.
MacroRunner(String, String) - Constructor for class ij.macro.MacroRunner: Create a new object that interprets macro source in a separate thread, and also passing a string argument.
MacroRunner(File) - Constructor for class ij.macro.MacroRunner: Create a new object that interprets a macro file using a separate thread.
MacroRunner(Program, int, String) - Constructor for class ij.macro.MacroRunner: Create a new object that runs a tokenized macro in a separate thread.
MacroRunner(Program, int, String, String) - Constructor for class ij.macro.MacroRunner: Create a new object that runs a tokenized macro in a separate thread, passing a string argument.
MacroRunner(Program, int, String, Editor) - Constructor for class ij.macro.MacroRunner: Create a new object that runs a tokenized macro in debug mode if 'editor' is not null.
Macro_Runner - class ij.plugin.Macro_Runner.: Opens and runs a macro file.
Macro_Runner() - Constructor for class ij.plugin.Macro_Runner
MaximumFinder - class ij.plugin.filter.MaximumFinder.: This ImageJ plug-in filter finds the maxima (or minima) of an image.
MaximumFinder() - Constructor for class ij.plugin.filter.MaximumFinder
Measurements - interface ij.measure.Measurements.
MeasurementsWriter - class ij.plugin.MeasurementsWriter.: Writes measurements to a tab-delimited text file.
MeasurementsWriter() - Constructor for class ij.plugin.MeasurementsWriter
MedianCut - class ij.process.MedianCut.: Converts an RGB image to 8-bit index color using Heckbert's median-cut color quantization algorithm.
MedianCut(int[], int, int) - Constructor for class ij.process.MedianCut
MedianCut(ColorProcessor) - Constructor for class ij.process.MedianCut
Memory - class ij.plugin.Memory.: This plugin implements the Edit/Options/Memory command.
Memory() - Constructor for class ij.plugin.Memory
MemoryMonitor - class ij.plugin.MemoryMonitor.: This plugin continuously plots ImageJ's memory utilization.
MemoryMonitor() - Constructor for class ij.plugin.MemoryMonitor
Menus - class ij.Menus.: This class installs and updates ImageJ's menus.
MessageDialog - class ij.gui.MessageDialog.: A modal dialog box that displays information.
MessageDialog(Frame, String, String) - Constructor for class ij.gui.MessageDialog
MontageMaker - class ij.plugin.MontageMaker.: Implements the Image/Stacks/Make Montage command.
MontageMaker() - Constructor for class ij.plugin.MontageMaker
MultiLineLabel - class ij.gui.MultiLineLabel.: Custom component for displaying multiple lines.
MultiLineLabel(String) - Constructor for class ij.gui.MultiLineLabel
MultiLineLabel(String, int) - Constructor for class ij.gui.MultiLineLabel
macroCount() - Method in class ij.macro.Program
macroRunning() - Static method in class ij.IJ: Returns true if the run(), open() or newImage() method is executing.
mag - Variable in class ij.gui.Roi
magnification - Variable in class ij.gui.ImageCanvas
magnification - Variable in class ij.gui.ProfilePlot
main(String[]) - Static method in class ij.ImageJ
major - Variable in class ij.process.EllipseFitter: Length of major axis
major - Variable in class ij.process.ImageStatistics: Length of major axis of fitted ellipse
make16bitEDM(ImageProcessor) - Method in class ij.plugin.filter.EDM: Calculates a 16-bit grayscale Euclidean Distance Map for a binary 8-bit image.
makeDefaultColorModel() - Method in class ij.process.ImageProcessor
makeFloatEDM(ImageProcessor, int, boolean) - Method in class ij.plugin.filter.EDM: Creates the Euclidian Distance Map of a (binary) byte image.
makeGaussianKernel(double, double, int) - Method in class ij.plugin.filter.GaussianBlur: Create a 1-dimensional normalized Gaussian kernel with standard deviation sigma and the running sum over the kernel Note: this is one side of the kernel only, not the full kernel as used by the Convolver class of ImageJ.