ImageJ home page ImageJ User Guide
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Noteworthy
Macro Listings
I Getting Started
1 Introduction
2 Installing & Maintaining IJ
2.1 IJ Distributions
2.2 Related Software
2.3 ImageJ2
3 Getting Help
II Working with ImageJ
4 Using Keyboard Shortcuts
5 Finding Commands
6 Undo & Redo
7 Image Types & Formats
8 Stacks & Hyperstacks
9 Color Images
10 Selections
11 Overlays
12 3D Volumes
13 Settings & Preferences
III Extending ImageJ
14 Macros
15 Scripts
16 Plugins
17 Scripting in Fiji
18 Command Line Interface
IV IJ User Interface
Toolbar
Status bar
Progress bar
19 Tools
19.1 Area Selection Tools
19.2 Line Selection Tools
19.3 Arrow Tool
19.4 Angle Tool
19.5 Point Tool
19.6 Multi-point Tool
19.7 Wand Tool
19.8 Text Tool
19.9 Magnifying Glass
19.10 Scrolling Tool
19.11 Color Picker Tool
19.12 More Tools Menu
19.13 Arrow
19.14 Brush
19.15 Developer Menu
19.16 Flood Filler
19.17 LUT Menu
19.18 Overlay Brush
19.19 Pencil
19.20 Pixel Inspector
19.21 Spray Can
19.22 Stacks Menu
20 Custom Tools
21 Contextual Menu
22 Results Table
23 Editor
24 Log Window
25 Customizing the Interface
V Menu Commands
26 File▷
26.1 New▷
26.2 Open…[o]
26.3 Open Next [O]
26.4 Open Samples▷
26.5 Open Recent▷
26.6 Import▷
26.7 Close [w]
26.8 Close All
26.9 Save [s]
26.10 Save As▷
26.11 Revert [r]
26.12 Page Setup…
26.13 Print…[p]
26.14 Quit
27 Edit▷
27.1 Undo [z]
27.2 Cut [x]
27.3 Copy [c]
27.4 Copy to System
27.5 Paste [v]
27.6 Paste Control…
27.7 Clear
27.8 Clear Outside
27.9 Fill [f]
27.10 Draw [d]
27.11 Invert [I]
27.12 Selection▷
27.13 Options▷
28 Image▷
28.1 Type▷
28.2 Adjust▷
28.3 Show Info…[i]
28.4 Properties…[P]
28.5 Color▷
28.6 Stacks▷
28.7 Hyperstacks▷
28.8 Crop [X]
28.9 Duplicate…[D]
28.10 Rename…
28.11 Scale…[E]
28.12 Transform▷
28.13 Zoom▷
28.14 Overlay▷
28.15 Lookup Tables▷
29 Process▷
29.1 Smooth [S]
29.2 Sharpen
29.3 Find Edges
29.4 Find Maxima…
29.5 Enhance Contrast…
29.6 Noise▷
29.7 Shadows▷
29.8 Binary▷
29.9 Math▷
29.10 FFT▷
29.11 Filters▷
29.12 Batch▷
29.13 Image Calculator…
29.14 Subtract Background…
29.15 Repeat Command [R]
30 Analyze▷
30.1 Measure…[m]
30.2 Analyze Particles…
30.3 Summarize
30.4 Distribution…
30.5 Label
30.6 Clear Results
30.7 Set Measurements…
30.8 Set Scale…
30.9 Calibrate…
30.10 Histogram [h]
30.11 Plot Profile [k]
30.12 Surface Plot…
30.13 Gels▷
30.14 Tools▷
31 Plugins▷
31.1 Macros▷
31.2 Shortcuts▷
31.3 Utilities▷
31.4 New▷
31.5 Compile and Run…
32 Window▷
32.1 Show All []]
32.2 Put Behind [tab]
32.3 Cascade
32.4 Tile
33 Help▷
33.1 IJ Website…
33.2 IJ News…
33.3 Documentation…
33.4 Installation…
33.5 Mailing List…
33.6 Dev.Resources…
33.7 Plugins…
33.8 Macros…
33.9 Macro Functions…
33.10 Update ImageJ…
33.11 Refresh Menus
33.12 About Plugins▷
33.13 About ImageJ…
VI Keyboard Shortcuts
34 Key Modifiers
35 Toolbar Shortcuts
ImageJ Contributors
ImageJ Related Publications
Colophon
Document Revision History
List of Abbreviations